The Rubber Tree Genome

The Rubber Tree Genome PDF

Author: Minami Matsui

Publisher: Springer Nature

Published: 2020-04-18

Total Pages: 191

ISBN-13: 3030422585

DOWNLOAD EBOOK →

This book presents the first comprehensive compilation of genome research on the Hevea brasiliensis rubber tree. The genomes of Hevea tree clones (cultivars) are described by three major international groups. Chapters on omics-driven investigations address a broad range of topics including genome annotation and utilisation, transcriptome and gene family analysis, genetic mapping, metabolic pathways in latex and molecular breeding. Additionally, an overview of fundamental rubber biology, especially on laticifers, provides a historical background that is relevant to rubber genome analysis. The book concludes with several perspectives on the future needs of rubber investigations and prospects of rubber genomics. Given the scope of topics, this book will appeal to researchers and university students working in genomics and biotechnology of the rubber tree, and to rubber breeders with an interest in non-conventional approaches to trait analysis, selection and breeding.

Biology of Hevea Rubber

Biology of Hevea Rubber PDF

Author: P.M. Priyadarshan

Publisher: Springer

Published: 2017-06-09

Total Pages: 251

ISBN-13: 331954506X

DOWNLOAD EBOOK →

In the second edition of this book, the origin, upkeep and latex harvest from the Hevea rubber tree are dealt with succinctly. New chapters have been included on Propagation Systems and Genetic Resources. The importance of Heterozygosis and Breeding is a new theme for the section on Breeding. A new chapter on Genomics and Molecular Breeding that focuses on the latest advancements on gene mapping, marker assisted selection and stimulation has been added. Lastly, ‘textboxes’ that highlight points and topics of significant interest are included in the new addition. Natural rubber has been an essential commodity not only for the tire industry but also for more than 50,000 products that holds elasticity as an attribute. The prime source of natural rubber worldwide is Hevea brasiliensis. Hevea rubber tree is an excellent example of how a soil-tree-atmosphere system can work in tandem. The retrieval of rubber through ‘injuring’ the tree on alternate days or once in three days or once in seven days, is indeed a unique arrangement followed universally that ensures income to the planter almost throughout the year. Every molecule of rubber is the end result of meticulous biochemical changes. Therefore the biology of Hevea rubber tree itself is a subject that aggregates science and technology for the realization of its industrial utility.

Ethnogenomics

Ethnogenomics PDF

Author: Michael R. Dove

Publisher:

Published: 2016

Total Pages: 2

ISBN-13:

DOWNLOAD EBOOK →

Recent path-breaking research on the genome of the rubber tree (Hevea brasiliensis) is presented in the context of challenges in the contemporary rubber industry: it is claimed that field production is "well below" theoretical yields and rubber breeding is "stagnating". I offer here some additional insights into the human dimensions of these challenges and ways of productively utilizing current research on the genetics of the rubber tree.

The Tangled Tree

The Tangled Tree PDF

Author: David Quammen

Publisher: Simon & Schuster

Published: 2019-08-06

Total Pages: 480

ISBN-13: 1476776636

DOWNLOAD EBOOK →

In this New York Times bestseller and longlist nominee for the National Book Award, “our greatest living chronicler of the natural world” (The New York Times), David Quammen explains how recent discoveries in molecular biology affect our understanding of evolution and life’s history. In the mid-1970s, scientists began using DNA sequences to reexamine the history of all life. Perhaps the most startling discovery to come out of this new field—the study of life’s diversity and relatedness at the molecular level—is horizontal gene transfer (HGT), or the movement of genes across species lines. It turns out that HGT has been widespread and important; we now know that roughly eight percent of the human genome arrived sideways by viral infection—a type of HGT. In The Tangled Tree, “the grandest tale in biology….David Quammen presents the science—and the scientists involved—with patience, candor, and flair” (Nature). We learn about the major players, such as Carl Woese, the most important little-known biologist of the twentieth century; Lynn Margulis, the notorious maverick whose wild ideas about “mosaic” creatures proved to be true; and Tsutomu Wantanabe, who discovered that the scourge of antibiotic-resistant bacteria is a direct result of horizontal gene transfer, bringing the deep study of genome histories to bear on a global crisis in public health. “David Quammen proves to be an immensely well-informed guide to a complex story” (The Wall Street Journal). In The Tangled Tree, he explains how molecular studies of evolution have brought startling recognitions about the tangled tree of life—including where we humans fit upon it. Thanks to new technologies, we now have the ability to alter even our genetic composition—through sideways insertions, as nature has long been doing. “The Tangled Tree is a source of wonder….Quammen has written a deep and daring intellectual adventure” (The Boston Globe).

Plant Genomes

Plant Genomes PDF

Author: Jean-Nicolas Volff

Publisher: Karger Medical and Scientific Publishers

Published: 2008-01-01

Total Pages: 155

ISBN-13: 3805584911

DOWNLOAD EBOOK →

Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.

Plant Genomics

Plant Genomics PDF

Author: Ibrokhim Y. Abdurakhmonov

Publisher: BoD – Books on Demand

Published: 2016-07-14

Total Pages: 312

ISBN-13: 9535124552

DOWNLOAD EBOOK →

Plant genomics aims to sequence, characterize, and study the genetic compositions, structures, organizations, functions, and interactions/networks of an entire plant genome. Its development and advances are tightly interconnected with proteomics, metabolomics, metagenomics, transgenomics, genomic selection, bioinformatics, epigenomics, phenomics, system biology, modern instrumentation, and robotics sciences. Plant genomics has significantly advanced over the past three decades in the land of inexpensive, high-throughput sequencing technologies and fully sequenced over 100 plant genomes. These advances have broad implications in every aspect of plant biology and breeding, powered with novel genomic selection and manipulation tools while generating many grand challenges and tasks ahead. This Plant genomics provides some updated discussions on current advances, challenges, and future perspectives of plant genome studies and applications.

Breeding Plantation Tree Crops: Tropical Species

Breeding Plantation Tree Crops: Tropical Species PDF

Author: Shri Mohan Jain

Publisher: Springer Science & Business Media

Published: 2008-10-08

Total Pages: 654

ISBN-13: 0387712011

DOWNLOAD EBOOK →

Tree species are indispensable to support human life. Due to their long life cycle and environmental sensitivity, breeding trees to suit day-to-day human needs is a formidable challenge. Whether they are edible or industrial crops, improving yield under optimal, sub-optimal and marginal areas calls for uni?ed efforts from the s- entistsaroundtheworld. Whiletheuniquenessofcoconutaskalpavriksha(Sanskr- meaning tree-of-life) marks its presence in every continent from Far East to South America, tree crops like cocoa, oil palm, rubber, apple, peach, grapes and walnut prove their environmental sensitivity towards tropical, sub-tropical and temperate climates. Desert climate is quintessential for date palm. Thus, from soft drinks to breweries to beverages to oil to tyres, the value addition offers a spectrum of pr- ucts to human kind, enriched with nutritional, environmental, ?nancial, social and trade related attributes. Taxonomically, tree crops do not con?ne to a few families, but spread across a section of genera, an attribute so unique that contributes immensely to genetic biodiversity even while cultivated at the commercial scale. Many of these species in?uence other ?ora to nurture in their vicinity, thus ensuring their integrity in p- serving the genetic biodiversity. While wheat, rice, maize, barley, soybean, cassava andbananamakeup themajorfoodstaples,manyfruittreespeciescontributegreatly tonutritionalenrichment inhumandiet. Theediblepartofthesespeciesisthesource of several nutrients that makes additives for the daily diet of humans, for example, vitamins, sugars, aromas and ?avour compounds, and raw material for food proce- ing industries. Tree crops face an array of agronomic and horticultural problems in propagation, yield, appearance, quality, diseases and pest control, abiotic stresses and poor shelf-life.

The Fungal Kingdom

The Fungal Kingdom PDF

Author: Joseph Heitman

Publisher: John Wiley & Sons

Published: 2020-07-10

Total Pages: 1136

ISBN-13: 1555819583

DOWNLOAD EBOOK →

Fungi research and knowledge grew rapidly following recent advances in genetics and genomics. This book synthesizes new knowledge with existing information to stimulate new scientific questions and propel fungal scientists on to the next stages of research. This book is a comprehensive guide on fungi, environmental sensing, genetics, genomics, interactions with microbes, plants, insects, and humans, technological applications, and natural product development.

Physiology of Woody Plants

Physiology of Woody Plants PDF

Author: Stephen G. Pallardy

Publisher: Academic Press

Published: 2010-07-20

Total Pages: 469

ISBN-13: 0080568718

DOWNLOAD EBOOK →

Woody plants such as trees have a significant economic and climatic influence on global economies and ecologies. This completely revised classic book is an up-to-date synthesis of the intensive research devoted to woody plants published in the second edition, with additional important aspects from the authors' previous book, Growth Control in Woody Plants. Intended primarily as a reference for researchers, the interdisciplinary nature of the book makes it useful to a broad range of scientists and researchers from agroforesters, agronomists, and arborists to plant pathologists and soil scientists. This third edition provides crutial updates to many chapters, including: responses of plants to elevated CO2; the process and regulation of cambial growth; photoinhibition and photoprotection of photosynthesis; nitrogen metabolism and internal recycling, and more. Revised chapters focus on emerging discoveries of the patterns and processes of woody plant physiology. * The only book to provide recommendations for the use of specific management practices and experimental procedures and equipment*Updated coverage of nearly all topics of interest to woody plant physiologists* Extensive revisions of chapters relating to key processes in growth, photosynthesis, and water relations* More than 500 new references * Examples of molecular-level evidence incorporated in discussion of the role of expansion proteins in plant growth; mechanism of ATP production by coupling factor in photosynthesis; the role of cellulose synthase in cell wall construction; structure-function relationships for aquaporin proteins

HiC-Pro: an Optimized and Flexible Pipeline for Hi-C Data Processing

HiC-Pro: an Optimized and Flexible Pipeline for Hi-C Data Processing PDF

Author: Oldenburg Oldenburg Press

Publisher:

Published: 2016-01-29

Total Pages: 40

ISBN-13: 9781523764426

DOWNLOAD EBOOK →

HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation products, performs quality controls and generates intra- and inter-chromosomal contact maps. It includes a fast implementation of the iterative correction method and is based on a memory-efficient data format for Hi-C contact maps. In addition, HiC-Pro can use phased genotype data to build allele-specific contact maps. We applied HiC-Pro to different Hi-C datasets, demonstrating its ability to easily process large data in a reasonable time. Source code and documentation are available at http://github.com/nservant/HiC-Pro.