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Plant Systems Biology

Author: Mikaël Lucas

Publisher: Humana

Published: 2021-11-26

Total Pages: 348

ISBN-13: 9781071618141

This second edition volume expands on the previous edition with an update on the latest techniques used to study plant systems biology on three specific scales: the molecular level, the tissue level, and the whole plant. Chapters cover topics such as gene regulatory network inference and dynamic modeling using ordinary differential equations or Boolean formalisms; protocols for at-will induction of plant aerial or root organs, or quantification of tissue mechanical properties; mathematical modeling of plant tissue using SimuPlant or VirtualLeaf; and simulating crop root systems using OpenSimRoot or R-SWMS. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible laboratory protocols or software tutorials, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and cutting-edge, Plants Systems Biology: Methods and Protocols, Second Edition is a valuable resource for plant biologists looking for different approaches to finding solutions to their questions and generating new ideas, as well as for students who desire to discover the field of plant systems biology.

Plant Systems Biology

Author: Sacha Baginsky

Publisher: Springer Science & Business Media

Published: 2007-06-25

Total Pages: 358

ISBN-13: 376437439X

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This volume aims to provide a timely view of the state-of-the-art in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.

Crop Systems Biology

Author: Xinyou Yin

Publisher: Springer

Published: 2015-11-11

Total Pages: 233

ISBN-13: 3319205625

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The sequencing of genomes has been completed for an increasing number of crop species, and researchers have now succeeded in isolating and characterising many important QTLs/genes. High expectations from genomics, however, are waving back toward the recognition that crop physiology is also important for realistic improvement of crop productivity. Complex processes and networks along various hierarchical levels of crop growth and development can be thoroughly understood with the help of their mathematical description – modelling. The further practical application of these understandings also requires quantitative predictions. In order to better support design, engineering and breeding for new crops and cultivars for improving agricultural production under global warming and climate change, there is an increasing call for an interdisciplinary research approach, which combines modern genetics and genomics, traditional physiology and biochemistry, and advanced bioinformatics and modelling. Such an interdisciplinary approach has been practised in various research groups for many years. However, it does not seem to be fully covered in the format of book publications. We want to initiate a book project on crop systems biology - narrowing the gaps between genotypes and phenotypes and the gaps between crop modelling and genetics/genomics, for publication in 2013/2014. The book will be meant for those scientists and graduate students from fundamental plant biology and applied crop science who are interested in bridging the gap between these two fields. We have invited a group of scientists (who have very good track records in publishing excellent papers in this field or in a closely related area) to contribute chapters to this new book, and they have agreed to do so.

Mathematical Modelling in Plant Biology

Author: Richard J. Morris

Publisher: Springer

Published: 2018-11-05

Total Pages: 219

ISBN-13: 3319990705

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Progress in plant biology relies on the quantification, analysis and mathematical modeling of data over different time and length scales. This book describes common mathematical and computational approaches as well as some carefully chosen case studies that demonstrate the use of these techniques to solve problems at the forefront of plant biology. Each chapter is written by an expert in field with the goal of conveying concepts whilst at the same time providing sufficient background and links to available software for readers to rapidly build their own models and run their own simulations. This book is aimed at postgraduate students and researchers working the field of plant systems biology and synthetic biology, but will also be a useful reference for anyone wanting to get into quantitative plant biology.

Annual Plant Reviews, Plant Systems Biology

Author: Gloria Coruzzi

Publisher: John Wiley & Sons

Published: 2009-05-06

Total Pages: 376

ISBN-13: 9781444312232

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Plant Systems Biology is an excellent new addition to theincreasingly well-known and respected Annual Plant Reviews.Split into two parts, this title offers the reader: A fundamental conceptual framework for Systems Biologyincluding Network Theory The progress achieved for diverse model organisms: Prokaryotes, C. elegans and Arabidopsis The diverse sources of “omic” information necessaryfor a systems understanding of plants Insights into the software tools developed for systemsbiology Interesting case studies regarding applications includingnitrogen-use, flowering-time and root development Ecological and evolutionary considerations regarding livingsystems This volume captures the cutting edge of systems biologyresearch and aims to be an introductory material for undergraduateand graduate students as well as plant and agricultural scientists,molecular biologists, geneticists and microbiologists. It alsoserves as a foundation in the biological aspects of the field forinterested computer scientists. Libraries in all universities andresearch establishments where biological and agricultural sciencesare studied and taught and integrated with Computer Sciences shouldhave copies of this important volume on their shelves.

Plant Biology Research and Training for the 21st Century

Author: National Research Council

Publisher: National Academies Press

Published: 1992-02-01

Total Pages: 80

ISBN-13: 0309046793

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Faster progress in plant biology research could benefit agriculture, the environment, medicine, and our understanding of basic biological processes. This book clearly and directly describes the impediments to greater achievements in plant science and suggests solutions. It presents an innovative plan that would create a comprehensive federal system of management and financial support for plant biology research and training.

Functional Biology of Plants

Author: Martin J. Hodson

Publisher: John Wiley & Sons

Published: 2012-04-26

Total Pages: 577

ISBN-13: 1119945062

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Functional Biology of Plants provides students and researchers with a clearly written, well structured whole plant physiology text. Early in the text, it provides essential information on molecular and cellular processes so that the reader can understand how they are integrated into the development and function of the plant at whole-plant level. Thus, this beautifully illustrated book, presents a modern, applied integration of whole plant and molecular approaches to the study of plants. It is divided into four parts: Part 1: Genes and Cells, looks at the origins of plants, cell structure, biochemical processes and genes and development. Part 2: The Functioning Plant, describes the structure and function of roots, stems, leaves, flowers and seed and fruit development. Part 3: Interactions and Adaptations, examines environmental and biotic stresses and how plants adapt and acclimatise to these conditions. Part 4: Future Directions, illustrates the great importance of plant research by looking at some well chosen, topical examples such as GM crops, biomass and bio-fuels, loss of plant biodiversity and the question of how to feed the planet. Throughout the book there are text boxes to illustrate particular aspects of how humans make use of plants, and a comprehensive glossary proves invaluable to those coming to the subject from other areas of life science.

Plant Genomes

Author: Jean-Nicolas Volff

Publisher: Karger Medical and Scientific Publishers

Published: 2008-01-01

Total Pages: 155

ISBN-13: 3805584911

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Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.

Annual Plant Reviews, Plant Systems Biology

Author: Gloria Coruzzi

Publisher: Wiley-Blackwell

Published: 2009-05-11

Total Pages: 0

ISBN-13: 9781405162838

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Plant Systems Biology is an excellent new addition to the increasingly well-known and respected Annual Plant Reviews. Split into two parts, this title offers the reader: A fundamental conceptual framework for Systems Biology including Network Theory The progress achieved for diverse model organisms: Prokaryotes, C. elegans and Arabidopsis The diverse sources of "omic" information necessary for a systems understanding of plants Insights into the software tools developed for systems biology Interesting case studies regarding applications including nitrogen-use, flowering-time and root development Ecological and evolutionary considerations regarding living systems This volume captures the cutting edge of systems biology research and aims to be an introductory material for undergraduate and graduate students as well as plant and agricultural scientists, molecular biologists, geneticists and microbiologists. It also serves as a foundation in the biological aspects of the field for interested computer scientists. Libraries in all universities and research establishments where biological and agricultural sciences are studied and taught and integrated with Computer Sciences should have copies of this important volume on their shelves.

Plant Stress Biology

Author: Heribert Hirt

Publisher: John Wiley & Sons

Published: 2009-12-02

Total Pages: 275

ISBN-13: 3527322906

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This is the first book to present a comprehensive and advanced discussion on the latest insights into plant stress biology. Starting with general aspects of biotic as well as abiotic stresses, this handbook and ready reference moves on to focus on topics of stress hormones, technical approaches such as proteomics, transcriptomics and genomics, and their integration into systemic modeling. This book is a valuable resource for researchers as well as professionals not just in plant sciences but also in cell and molecular biology as well as biotechnology.