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Building Ontologies with Basic Formal Ontology

Author: Robert Arp

Publisher: MIT Press

Published: 2015-08-28

Total Pages: 245

ISBN-13: 026232959X

An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.

Ontologies

Author: Raj Sharman

Publisher: Springer

Published: 2016-04-01

Total Pages: 952

ISBN-13: 9781489977304

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Ontology, or the nature of being, has been a focal area of study in the philosophical disciplines for a long time. Interpreted simply, the term ontology refers to the question what kinds of things exist? to a philosopher, while a computer scientist grapples with the question what kinds of things should we capture and represent? Together, research on the two questions yield a broad framework for the analysis of a discourse universe, its representation in some abstract form and the development of organizations and systems within the universe. The philosophical perspective on ontology provides a description of the essential properties and relations of all beings in the universe, while this notion has been expanded as well as specialized in the fields of computer science and artificial intelligence. The AI/CS communities now use this notion to refer to not one but multiple ontologies. In the AI/CS perspective, an ontology refers to the specification of knowledge about entities, and their relationships and interactions in a bounded universe of discourse only. As a result, a number of bounded-universe ontologies have been created over the last decade. These include the Chemicals ontology in the chemistry area, the TOVE and Enterprise ontologies for enterprise modeling, the REA ontology in the accounting area, organizational knowledge ontology in the knowledge management area, an ontology of air campaign planning in the defense area, and the GALEN ontology in the medical informatics area."

Handbook on Ontologies

Author: Steffen Staab

Publisher: Springer Science & Business Media

Published: 2013-04-17

Total Pages: 661

ISBN-13: 3540247505

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An ontology is a description (like a formal specification of a program) of concepts and relationships that can exist for an agent or a community of agents. The concept is important for the purpose of enabling knowledge sharing and reuse. The Handbook on Ontologies provides a comprehensive overview of the current status and future prospectives of the field of ontologies. The handbook demonstrates standards that have been created recently, it surveys methods that have been developed and it shows how to bring both into practice of ontology infrastructures and applications that are the best of their kind.

Ontologies:

Author: Dieter Fensel

Publisher: Springer Science & Business Media

Published: 2013-03-09

Total Pages: 160

ISBN-13: 3662043963

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Ontologies have been developed and investigated for quite a while now in artificial intelligence and natural language processing to facilitate knowledge sharing and reuse. More recently, the notion of ontologies has attracted attention from fields such as intelligent information integration, cooperative information systems, information retrieval, electronic commerce, and knowledge management. The author systematically introduces the notion of ontologies to the non-expert reader and demonstrates in detail how to apply this conceptual framework for improved intranet retrieval of corporate information and knowledge and for enhanced Internet-based electronic commerce. In the second part of the book, the author presents a more technical view on emerging Web standards, like XML, RDF, XSL-T, or XQL, allowing for structural and semantic modeling and description of data and information.

Introduction to Bio-Ontologies

Author: Peter N. Robinson

Publisher: CRC Press

Published: 2011-06-22

Total Pages: 514

ISBN-13: 1439836663

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Introduction to Bio-Ontologies explores the computational background of ontologies. Emphasizing computational and algorithmic issues surrounding bio-ontologies, this self-contained text helps readers understand ontological algorithms and their applications.The first part of the book defines ontology and bio-ontologies. It also explains the importan

Andean Ontologies

Author: María Cecilia Lozada

Publisher: University Press of Florida

Published: 2019-06-17

Total Pages: 385

ISBN-13: 0813057140

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Andean Ontologies is a fascinating interdisciplinary investigation of how ancient Andean people understood their world and the nature of being. Exploring pre-Hispanic ideas of time, space, and the human body, these essays highlight a range of beliefs across the region’s different cultures, emphasizing the relational aspects of identity in Andean worldviews. Studies included here show that Andeans physically interacted with their pasts through recurring ceremonies in their ritual calendar and that Andean bodies were believed to be changeable entities with the ability to interact with nonhuman and spiritual worlds. A survey of rock art describes Andeans’ changing relationships with places and things over time. Archaeological and ethnographic evidence reveals head hair was believed to be a conduit for the flow of spiritual power, and bioarchaeological remains offer evidence of Andean perceptions of age and wellness. This volume breaks new ground by bringing together an array of renowned specialists including anthropologists, bioarchaeologists, historians, linguists, ethnohistorians, and art historians to evaluate ancient Amerindian ideologies through different interpretive lenses. Many are local researchers from South American countries such as Ecuador, Peru, Bolivia, Chile, and Argentina, and this volume makes their work available to North American readers for the first time. Their essays are highly contextualized according to the territories and time periods studied. Instead of taking an external, outside-in approach, they prioritize internal and localized views that incorporate insights from today’s indigenous societies. This cutting-edge collection demonstrates the value of a multifaceted, holistic, inside-out approach to studying the pre-Columbian world. Contributors: Catherine J. Allen | Richard Lunniss | Matthew Sayre | Nicco La Mattina | Luis Muro | Luis Jaime Castillo | Elsa Tomasto | Giles Spence-Morrow | Edward Swenson | Mary Glowacki | Andres Laguens | Bruce Mannheim | Juan Villanueva | Andrés Troncoso

Ontology

Author: Dale Jacquette

Publisher: Routledge

Published: 2014-12-18

Total Pages: 278

ISBN-13: 1317489586

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The philosophical study of what exists and what it means for something to exist is one of the core concerns of metaphysics. This introduction to ontology provides readers with a comprehensive account of the central ideas of the subject of being. This book is divided into two parts. The first part explores questions of pure philosophical ontology: what is meant by the concept of being, why there exists something rather than nothing, and why there is only one logically contingent actual world. Dale Jacquette shows how logic provides the only possible answers to these fundamental problems. The second part of the book examines issues of applied scientific ontology. Jacquette offers a critical survey of some of the most influential traditional ontologies, such as the distinction between appearance and reality, and the categories of substance and transcendence. The ontology of physical entities - space, time, matter and causation - is examined as well as the ontology of abstract entities such as sets, numbers, properties, relations and propositions. The special problems posed by the subjectivity of mind and of postulating a god are also explored in detail. The final chapter examines the ontology of culture, language and art.

Ontology Made Easy

Author: Amie Lynn Thomasson

Publisher: Oxford University Press, USA

Published: 2015

Total Pages: 361

ISBN-13: 0199385114

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This volume aims to develop the easy approach to ontology, showing how it leads to both a first-order simple realism about the disputed entities and a form of metaontological deflationism that takes ontological disputes themselves to be misguided, since existence questions may be answered by straightforward conceptual and/or empirical work. It also aims to defend the easy approach against a range of objections and to show it to be a viable and attractive alternative to hard ontology.

Historical Ontology

Author: Ian Hacking

Publisher: Harvard University Press

Published: 2004-09-15

Total Pages: 292

ISBN-13: 9780674016071

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In this text, Ian Hacking offers his reflections on the philosophical uses of history. The focus is the historical emergence of concepts and objects.

An Introduction to Ontology Engineering

Author: C. Maria Keet

Publisher:

Published: 2018-11-07

Total Pages: 344

ISBN-13: 9781848902954

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An Introduction to Ontology Engineering introduces the student to a comprehensive overview of ontology engineering, and offers hands-on experience that illustrate the theory. The topics covered include: logic foundations for ontologies with languages and automated reasoning, developing good ontologies with methods and methodologies, the top-down approach with foundational ontologies, and the bottomup approach to extract content from legacy material, and a selection of advanced topics that includes Ontology-Based Data Access, the interaction between ontologies and natural languages, and advanced modelling with fuzzy and temporal ontologies. Each chapter contains review questions and exercises, and descriptions of two group assignments are provided as well. The textbook is aimed at advanced undergraduate/postgraduate level in computer science and could fi t a semester course in ontology engineering or a 2-week intensive course. Domain experts and philosophers may fi nd a subset of the chapters of interest, or work through the chapters in a different order. Maria Keet is an Associate Professor with the Department of Computer Science, University of Cape Town, South Africa. She received her PhD in Computer Science in 2008 at the KRDB Research Centre, Free University of Bozen-Bolzano, Italy. Her research focus is on knowledge engineering with ontologies and Ontology, and their interaction with natural language and conceptual data modelling, which has resulted in over 100 peer-reviewed publications. She has developed and taught multiple courses on ontology engineering and related courses at various universities since 2009.