Normal Mode Analysis

Normal Mode Analysis PDF

Author: Qiang Cui

Publisher: CRC Press

Published: 2005-12-12

Total Pages: 448

ISBN-13: 142003507X

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Rapid developments in experimental techniques continue to push back the limits in the resolution, size, and complexity of the chemical and biological systems that can be investigated. This challenges the theoretical community to develop innovative methods for better interpreting experimental results. Normal Mode Analysis (NMA) is one such technique

Normal Modes and Localization in Nonlinear Systems

Normal Modes and Localization in Nonlinear Systems PDF

Author: Alexander F. Vakakis

Publisher: Springer Science & Business Media

Published: 2013-06-29

Total Pages: 290

ISBN-13: 9401724520

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The nonlinear normal modes of a parametrically excited cantilever beam are constructed by directly applying the method of multiple scales to the governing integral-partial differential equation and associated boundary conditions. The effect of the inertia and curvature nonlin earities and the parametric excitation on the spatial distribution of the deflection is examined. The results are compared with those obtained by using a single-mode discretization. In the absence of linear viscous and quadratic damping, it is shown that there are nonlinear normal modes, as defined by Rosenberg, even in the presence of a principal parametric excitation. Furthermore, the nonlinear mode shape obtained with the direct approach is compared with that obtained with the discretization approach for some values of the excitation frequency. In the single-mode discretization, the spatial distribution of the deflection is assumed a priori to be given by the linear mode shape ¢n, which is parametrically excited, as Equation (41). Thus, the mode shape is not influenced by the nonlinear curvature and nonlinear damping. On the other hand, in the direct approach, the mode shape is not assumed a priori; the nonlinear effects modify the linear mode shape ¢n. Therefore, in the case of large-amplitude oscillations, the single-mode discretization may yield inaccurate mode shapes. References 1. Vakakis, A. F., Manevitch, L. I., Mikhlin, Y. v., Pilipchuk, V. N., and Zevin A. A., Nonnal Modes and Localization in Nonlinear Systems, Wiley, New York, 1996.

Molecular Modeling of Proteins

Molecular Modeling of Proteins PDF

Author: Andreas Kukol

Publisher: Humana Press

Published: 2017-04-30

Total Pages: 474

ISBN-13: 9781493954919

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Molecular Modeling of Proteins, Second Edition provides a theoretical background of various methods available and enables non-specialists to apply methods to their problems by including updated chapters and new material not covered in the first edition. This detailed volume opens by featuring classical and advanced simulation methods as well as methods to set-up complex systems such as lipid membranes and membrane proteins and continues with chapters devoted to the simulation and analysis of conformational changes of proteins, computational methods for protein structure prediction, usage of experimental data in combination with computational techniques, as well as protein-ligand interactions, which are relevant in the drug design process. Written for the highly successful Methods in Molecular Biology series, chapters include thorough introductions, step-by-step instructions and notes on troubleshooting and avoiding common pitfalls. Update-to-date and authoritative, Molecular Modeling of Proteins, Second Edition aims to aid researchers in the physical, chemical and biosciences interested in utilizing this powerful technology.

Protein Simulations

Protein Simulations PDF

Author: Valerie Daggett

Publisher: Elsevier

Published: 2003-11-26

Total Pages: 477

ISBN-13: 0080493785

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Protein Simulation focuses on predicting how protein will act in vivo. These studies use computer analysis, computer modeling, and statistical probability to predict protein function. * Force Fields* Ligand Binding* Protein Membrane Simulation* Enzyme Dynamics* Protein Folding and unfolding simulations

The Physics of Waves

The Physics of Waves PDF

Author: Howard Georgi

Publisher: Addison Wesley Publishing Company

Published: 1993

Total Pages: 442

ISBN-13:

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The first complete introduction to waves and wave phenomena by a renowned theorist. Covers damping, forced oscillations and resonance; normal modes; symmetries; traveling waves; signals and Fourier analysis; polarization; diffraction.

A Practical Introduction to the Simulation of Molecular Systems

A Practical Introduction to the Simulation of Molecular Systems PDF

Author: Martin J. Field

Publisher: Cambridge University Press

Published: 2007-07-19

Total Pages: 294

ISBN-13: 1139465813

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Molecular simulation is a powerful tool in materials science, physics, chemistry and biomolecular fields. This updated edition provides a pragmatic introduction to a wide range of techniques for the simulation of molecular systems at the atomic level. The first part concentrates on methods for calculating the potential energy of a molecular system, with new chapters on quantum chemical, molecular mechanical and hybrid potential techniques. The second part describes methods examining conformational, dynamical and thermodynamical properties of systems, covering techniques including geometry-optimization, normal-mode analysis, molecular dynamics, and Monte Carlo simulation. Using Python, the second edition includes numerous examples and program modules for each simulation technique, allowing the reader to perform the calculations and appreciate the inherent difficulties involved in each. This is a valuable resource for researchers and graduate students wanting to know how to use atomic-scale molecular simulations. Supplementary material, including the program library and technical information, available through www.cambridge.org/9780521852524.

Nonlinear Structures and Systems, Volume 1

Nonlinear Structures and Systems, Volume 1 PDF

Author: Gaetan Kerschen

Publisher: Springer

Published: 2019-06-28

Total Pages: 271

ISBN-13: 303012391X

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Nonlinear Structures & Systems, Volume 1: Proceedings of the 37th IMAC, A Conference and Exposition on Structural Dynamics, 2019, the first volume of eight from the Conference brings together contributions to this important area of research and engineering. The collection presents early findings and case studies on fundamental and applied aspects of Nonlinear Dynamics, including papers on: Nonlinear Reduced-order Modeling Jointed Structures: Identification, Mechanics, Dynamics Experimental Nonlinear Dynamics Nonlinear Model & Modal Interactions Nonlinear Damping Nonlinear Modeling & Simulation Nonlinearity & System Identification

Topics in Modal Analysis & Testing, Volume 8

Topics in Modal Analysis & Testing, Volume 8 PDF

Author: Brandon Dilworth

Publisher: Springer Nature

Published: 2020-10-22

Total Pages: 413

ISBN-13: 3030477177

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Topics in Modal Analysis & Testing, Volume 8: Proceedings of the 38th IMAC, A Conference and Exposition on Structural Dynamics, 2020, the eighth volume of nine from the Conference, brings together contributions to this important area of research and engineering. The collection presents early findings and case studies on fundamental and applied aspects of Modal Analysis, including papers on: Operational Modal & Modal Analysis Applications Experimental Techniques Modal Analysis, Measurements & Parameter Estimation Modal Vectors & Modeling Basics of Modal Analysis Additive Manufacturing & Modal Testing of Printed Parts

Advances in Optical Science and Engineering

Advances in Optical Science and Engineering PDF

Author: Indrani Bhattacharya

Publisher: Springer

Published: 2017-09-21

Total Pages: 668

ISBN-13: 9811039089

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The Proceedings of 3rd International Conference on Opto-Electronics and Applied Optics, OPTRONIX 2016 is an effort to promote and present the research works by scientists and researchers including students in India and abroad in the area of Green Photonics and other related areas as well as to raise awareness about the recent trends of research and development in the area of the related fields. The book has been organized in such a way that it will be easier for the readers to go through and find out the topic of their interests. The first part includes the Keynote addresses by Rajesh Gupta, Department of Energy Science and Engineering, Indian Institute of Technology, Bombay; P.T. Ajith Kumar, President and Leading Scientist Light Logics Holography and Optics, Crescent Hill, Trivandrum, Kerala; and K.K. Ghosh, Institute of Engineering & Management, Kolkata, India. The second part focuses on the Plenary and Invited Talks given by eminent scientists namely, Vasudevan Lakshminarayanan, University of Waterloo, Canada; Motoharu Fujigaki, University of Fukuii, Japan; Takeo Sasaki, Tokyo University of Science, Japan; Kehar Singh, Former Professor, Indian Institute of Technology, Delhi, India; Rajpal S. Sirohi, Tezpur University, India; Ajoy Kumar Chakraborty, Institute of Engineering & Management, India; Lakshminarayan Hazra, Emeritus Professor, Calcutta University, India; S.K. Bhadra, Emeritus Scientist, Indian Institute of Chemical Biology, India; Partha Roy Chaudhuri, Department of Physics, Indian Institute of Technology, Kharagpur, India; Navin Nishchal, Indian Institute of Technology, Patna, India; Tarun Kumar Gangopadhyay, CSIR-Central Glass and Ceramic Research Institute, India; Samudra Roy, Department of Physics, Indian Institute of Technology, Kharagpur, India; Kamakhya Ghatak, University of Engineering & Management, India. The subsequent parts focus on contributory papers in : Green Photonics; Fibre and Integrated Optics; Lasers, Interferometry; Optical Communication and Networks; Optical and Digital Data and Image Processing; Opto-Electronic Devices, Terahertz Technology; Nano-Photonics, Bio-Photonics, Bio-Medical Optics; Lasers, Quantum Optics and Information Technology; E. M. Radiation Theory and Antenna; Cryptography; Quantum and Non-Linear Optics, Opto-Electronic Devices; Non-Linear Waveguides; Micro-Electronics and VLSI; Interdisciplinary.