Microbial Bioinformatics in the Oil and Gas Industry

Microbial Bioinformatics in the Oil and Gas Industry PDF

Author: Kenneth Wunch

Publisher: CRC Press

Published: 2021-07-15

Total Pages: 293

ISBN-13: 1000410765

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This book brings together contributions from leading scientists, academics, and experts from the oil and gas industry to discuss microbial-related problems faced by the industry and how bioinformatics and an interdisciplinary scientific approach can address these challenges. Microbial Bioinformatics in the Oil and Gas Industry: Applications to Reservoirs and Processes presents the major industrial problems caused by microbes (e.g., souring, biocorrosion) as well as the beneficial activities (e.g., biofuels, bioremediation). FEATURES Offers a detailed description of how bioinformatics has advanced our understanding of numerous issues in the oil and gas industry Covers cases from geographically diverse oil fields, laboratories, and research groups Contains fundamentals and applied information of relevance to the oil and gas sector Presents contributions from a team of international experts across industry and academia With its cross-disciplinary approach, this comprehensive book provides microbial ecologists, molecular biologists, operators, engineers, chemists, and academics involved in the sector with an improved understanding of the significance of microbial bioinformatics applications in the oil and gas industry.

Petroleum Microbiology

Petroleum Microbiology PDF

Author: Trevor Jones

Publisher: Editions OPHRYS

Published:

Total Pages: 902

ISBN-13: 9782710811350

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Hydrocarbons and their derivatives (oxygenated and chlorinated, in particular), both natural and xenobiotic, represent a very large class of compounds whose conversions and degradation by microorganisms cover an extremely rich field, whose concepts are detailed in this book. The fascinating evolution of these concepts over the last twenty years has revealed the extent of the processes implemented in the environment and has multiplied their industrial applications. The resulting achievements and the current developments are described in this book.The English edition of this reference manual is an entirely revised and updated version of the French edition. It is intended for professionals, microbiologists and chemists, as well as scientists, engineers, teachers and post-doctoral researchers, who are interested by the conversions of hydrocarbons and by microbial ecology.The French edition of this book was awarded a special mention for engineering education text book by the Roberval Prize committee in 2007.

Computing for Comparative Microbial Genomics

Computing for Comparative Microbial Genomics PDF

Author: David Wayne Ussery

Publisher: Springer Science & Business Media

Published: 2009-02-26

Total Pages: 272

ISBN-13: 1848002548

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Overview and Goals This book describes how to visualize and compare bacterial genomes. Sequencing technologies are becoming so inexpensive that soon going for a cup of coffee will be more expensive than sequencing a bacterial genome. Thus, there is a very real and pressing need for high-throughput computational methods to compare hundreds and thousands of bacterial genomes. It is a long road from molecular biology to systems biology, and in a sense this text can be thought of as a path bridging these ? elds. The goal of this book is to p- vide a coherent set of tools and a methodological framework for starting with raw DNA sequences and producing fully annotated genome sequences, and then using these to build up and test models about groups of interacting organisms within an environment or ecological niche. Organization and Features The text is divided into four main parts: Introduction, Comparative Genomics, Transcriptomics and Proteomics, and ? nally Microbial Communities. The ? rst ? ve chapters are introductions of various sorts. Each of these chapters represents an introduction to a speci? c scienti? c ? eld, to bring all readers up to the same basic level before proceeding on to the methods of comparing genomes. First, a brief overview of molecular biology and of the concept of sequences as biological inf- mation are given.

Microbiologically Influenced Corrosion in the Upstream Oil and Gas Industry

Microbiologically Influenced Corrosion in the Upstream Oil and Gas Industry PDF

Author: Torben Lund Skovhus

Publisher: CRC Press

Published: 2017-03-03

Total Pages: 532

ISBN-13: 1498726607

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Microorganisms are ubiquitously present in petroleum reservoirs and the facilities that produce them. Pipelines, vessels, and other equipment used in upstream oil and gas operations provide a vast and predominantly anoxic environment for microorganisms to thrive. The biggest technical challenge resulting from microbial activity in these engineered environments is the impact on materials integrity. Oilfield microorganisms can affect materials integrity profoundly through a multitude of elusive (bio)chemical mechanisms, collectively referred to as microbiologically influenced corrosion (MIC). MIC is estimated to account for 20 to 30% of all corrosion-related costs in the oil and gas industry. This book is intended as a comprehensive reference for integrity engineers, production chemists, oilfield microbiologists, and scientists working in the field of petroleum microbiology or corrosion. Exhaustively researched by leaders from both industry and academia, this book discusses the latest technological and scientific advances as well as relevant case studies to convey to readers an understanding of MIC and its effective management.

Microbial Enhancement of Oil Recovery - Recent Advances

Microbial Enhancement of Oil Recovery - Recent Advances PDF

Author: E.C. Donaldson

Publisher: Elsevier

Published: 1991-04-03

Total Pages: 529

ISBN-13: 9780080868899

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This conference was instituted to examine field activities in Microbial Enhancement of Oil Recovery. The U.S. Department of Energy has sponsored several field projects and the details from some of these were presented, as well as a few from industry. The balance of the program was concerned with new developments in research. Today's oil production technology leaves one third to one half of the original oil in place in the reservoir at abandonment of secondary recovery (waterflooding). This leaves a very large target for microbial enhanced oil recovery which was shown by the research papers of this conference to be capable of producing up to 50% of the residual oil. The field trials show that the normal projected oil production decline curve can be reversed, or leveled off by microbial enhancement of oil recovery. This conference has shown that a variety of applications are possible to correct oilfield problems as well as to enhance oil recovery. Among these is the suppression of hydrogen sulfide production which alone is a tremendous advance because of the large quantity of sour oil production. If hydrogen sulfide production can be curtailed it would increase the value of the produced oil, decrease it toxicity, and largely decrease it corrosiveness. All of these would be welcome both in the field and at the petroleum refinery where special precautions must be taken to process sour crude oil. Another very important discovery is the ability of certain bacteria to eliminate paraffin deposition around the producing well and in the tubulars. This is a welcome improvement for many producers who have considerable difficulty in controlling paraffin deposition.

Petroleum Microbiology

Petroleum Microbiology PDF

Author: Bernard Ollivier

Publisher:

Published: 2005

Total Pages: 365

ISBN-13: 9781555817589

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Annotation Petroleum Microbiology is a stateoftheart presentation of the specific microbes that inhabit oil reservoirs, with an emphasis on the ecological significance of anaerobic microorganisms. An intriguing introduction to extremophilic microbes, the book considers the various beneficial and detrimental effects of bacteria and archaea indigenous to the oil field environment. Presenting fundamental and applied biological approaches, the book serves as an invaluable reference source for petroleum engineers, remediation professionals, and field researchers. First providing basic, updated material on the microbial ecology of oil fields, Petroleum Microbiology explores the impacts of microbial activities on the composition of crude oil and on petroleum production, as well as examining bacterial mechanisms involved in the biodegradation of hydrocarbons. The editors provide a compilation of relevant information and coverage of recent developments, incorporating chapters on fermentative, ironreducing, and nitratereducing microorganisms; biodegradation of petroleum in subsurface geological reservoirs; microbial enhancement of oil recovery; petroleum upgrade through the use of biotechnology; and the microbiology of marine oil spill bioremediation.

Petroleum Microbial Biotechnology: Challenges and Prospects

Petroleum Microbial Biotechnology: Challenges and Prospects PDF

Author: Wael A. Ismail

Publisher: Frontiers Media SA

Published: 2017-09-08

Total Pages: 236

ISBN-13: 2889452565

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Petroleum hydrocarbons are both a product of, and rich substrate for, microorganisms from across all Domains of life. Rooted deeply in the history of microbiology, hydrocarbons have been studied as sources of carbon and energy for microorganisms for over a century. As global demand for petroleum and its refined products continues to rise, so do challenges associated with environmental pollution, oil well souring, infrastructure corrosion, oil recovery, transport, refining, and upgrading of heavy crude oils and bitumens. Advances in genomics, synthetic biology and metabolic engineering has invigorated interest in petroleum microbial biotechnology as interest grows in technologies for in situ methane production, biodesulfurization and biodenitrogenation, bio-upgrading of heavy crudes, microbial enhanced oil recovery, corrosion control, and biocatalysts for generating value-added products. Given the complexity of the global petroleum industry and the harsh conditions in which it operates, a deeper understanding of the ecophysiology of aerobic and anaerobic microbial communities that have associations with petroleum hydrocarbons is needed if robust technologies are to be deployed successfully. This research topic highlights recent advances in microbial enhanced oil recovery, methanogenic hydrocarbon metabolism and carbon dioxide sequestration, bioremediation, microbiologically influenced corrosion, biodesulfurization, and the application of metagenomics to better understand microbial communities associated with petroleum hydrocarbons.

The Science and Applications of Microbial Genomics

The Science and Applications of Microbial Genomics PDF

Author: Institute of Medicine

Publisher: National Academies Press

Published: 2013-05-02

Total Pages: 429

ISBN-13: 0309268192

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Over the past several decades, new scientific tools and approaches for detecting microbial species have dramatically enhanced our appreciation of the diversity and abundance of the microbiota and its dynamic interactions with the environments within which these microorganisms reside. The first bacterial genome was sequenced in 1995 and took more than 13 months of work to complete. Today, a microorganism's entire genome can be sequenced in a few days. Much as our view of the cosmos was forever altered in the 17th century with the invention of the telescope, these genomic technologies, and the observations derived from them, have fundamentally transformed our appreciation of the microbial world around us. On June 12 and 13, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to discuss the scientific tools and approaches being used for detecting and characterizing microbial species, and the roles of microbial genomics and metagenomics to better understand the culturable and unculturable microbial world around us. Through invited presentations and discussions, participants examined the use of microbial genomics to explore the diversity, evolution, and adaptation of microorganisms in a wide variety of environments; the molecular mechanisms of disease emergence and epidemiology; and the ways that genomic technologies are being applied to disease outbreak trace back and microbial surveillance. Points that were emphasized by many participants included the need to develop robust standardized sampling protocols, the importance of having the appropriate metadata, data analysis and data management challenges, and information sharing in real time. The Science and Applications of Microbial Genomics summarizes this workshop.

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