Methods in Redox Signaling

Methods in Redox Signaling PDF

Author: Dipak Kumar Das

Publisher:

Published: 2010

Total Pages: 0

ISBN-13: 9781934854068

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Methods in Redox Signaling is the first and only comprehensive handbook on the experimental methods used to study redox signaling. Formerly recognized as destructive mechanisms, reactive oxygen species (ROS) have now been recognized as saviors by protecting the cells through redox signaling. This evolving science involves the pathobiology of various disease processes including cancer, cardiovascular diseases, wound healing, and many other degenerative diseases. Although the concept of reactive oxygen species has been known to some for decades, their potential role in the biological system has only been recognized in recent years. With the identification of these new mechanisms and their potential, the exploration in this area is expanding rapidly and the scientific articles are pouring in. Being relatively young, a vast majority of the mechanisms of redox signaling, especially those related to disease processes still remain unknown. Methods in Redox Signaling provides a valuable tool for the growing number of scientists engaging in the research and investigation involving redox regulation of degenerative diseases.

Cellular Implications Of Redox Signaling

Cellular Implications Of Redox Signaling PDF

Author: Avihai Danon

Publisher: World Scientific

Published: 2003-07-30

Total Pages: 441

ISBN-13: 1783261153

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Redox regulation, like phosphorylation, is a covalent regulatory system that controls many of the normal cellular functions of all living cells and organisms. In addition, it controls how cells respond to stress involving oxidants and free radicals, which underlie many degenerative diseases. This area is undergoing a transition from general knowledge to specific description of the components and mechanisms involved.This invaluable book provides a timely basic description of a field whose relevance to cell biology and degenerative diseases is of the utmost importance. It describes the state of the art, lays the foundations for understanding the reactions involved, and presents the prospects for future developments. It can serve as a basic text for any undergraduate or graduate course that deals with redox regulation, oxidative stress and free radicals under normal and pathological conditions in bacterial, plant and animal cells.

Redox-Mediated Signal Transduction

Redox-Mediated Signal Transduction PDF

Author: John T. Hancock

Publisher:

Published: 2019

Total Pages: 199

ISBN-13: 9781493994632

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This volume explores the scope of the cellular redox analysis and the importance of not being limited by frequently changing and evolving technology. The chapters in this book cover a wide range of topics such as redox components in animal and plant cells and the role of reactive oxygen species, reactive nitrogen species, and hydrogen sulphide in cell signaling; measuring modifications using Flow Cytometry, ELISA assays, and Western blot analysis; measurement of oxidative stress in mitochondira and biological systems; and the use of the genetically encoded fluorescent probe HyPer. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and informative, Redox-Mediated Signal Transduction: Methods and Protocols, Second Edition is a valuable resource for both novice and expert researchers who want to expand their studies into new areas and new systems in the evolving redox field.

Redox Signaling and Biomarkers in Ageing

Redox Signaling and Biomarkers in Ageing PDF

Author: Ufuk Çakatay

Publisher: Springer Nature

Published: 2021-12-02

Total Pages: 447

ISBN-13: 3030849651

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This book aims to present the age-related alterations in redox signaling networks and their diagnostic biomarkers in aging cells using multidisciplinary approach. Establishing sensitive and specific biomarkers of dynamic redox homeostasis is crucially important in the development of effective antiaging and senolytic interventions. Recent years have seen tremendous advances in the understanding of redox signaling events which highlight the process of aging and age-related pathologies. A major challenge in biological aging research is developing reliable biomarkers to determine the consequences of disrupted redox signaling networks long before the clinical diagnosis of age-related diseases is made. Therefore, we have chosen to concentrate on aging-induced aberrant redox signaling networks, their biomarkers, and pathological consequences in this book. Although oxidation is a natural metabolic process, the imbalance in the level of oxidants and antioxidants causes oxidative stress and eventually leads to inflammatory conditions, diabetes, neurodegenerative diseases, and cancer. Novel redox-sensitive biomarkers for the evaluation of aging-induced proteinopathies such as amyloid ß and tau proteins in Alzheimer's disease, α-synuclein in Parkinson's disease, and islet amyloid polypeptides in type 2 diabetes mellitus recently drew the attention of researchers. Inside this textbook, readers will find comprehensive perspectives on the association between redox homeostasis and the aging process both at the molecular and clinical levels. Due to the inherent relationship between impaired metabolic activities and oxidative stress, the temporal interaction between intermediary metabolism and disturbed redox status can lead to greater susceptibility to aging-induced diseases and disorders, such as cardiovascular diseases, hypertension, and diabetes. This knowledge could be a key to continued research toward improving medication regimens such as in cancer and cardiovascular therapies, and procedural outcomes for patients. This book brings together current research evidence and knowledge on redox signaling and biomarkers in aging in chapters written by leading global experts in this rapidly evolving field. We hope that this textbook is of interest to a wide group of researchers, advanced students, scientifically curious non-specialist readers and clinicians alike.

Redox Signaling and Regulation in Biology and Medicine

Redox Signaling and Regulation in Biology and Medicine PDF

Author: Claus Jacob

Publisher: John Wiley & Sons

Published: 2009-05-06

Total Pages: 514

ISBN-13: 3527627596

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This first entry-level guide to the multifaceted field takes readers one step further than existing textbooks. In an easily accessible manner, the authors integrate the biochemistry, cell biology and medical implications of intracellular redox processes, demonstrating that complex science can be presented in a clear and almost entertaining way. Perfect for students and junior researchers, this is an equally valuable addition to courses in biochemistry, molecular biology, cell biology, and human physiology.

Oxidants and Redox Signaling in Inflammation

Oxidants and Redox Signaling in Inflammation PDF

Author: Gabor Csanyi

Publisher: Frontiers Media SA

Published: 2019-07-10

Total Pages: 154

ISBN-13: 2889458881

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During the last two decades, our view of the role of reactive oxygen species (ROS) in inflammatory processes has changed dramatically. ROS that are constantly produced at lower levels by living cells metabolizing oxygen contribute to normal cellular function and tissue homeostasis. ROS are produced at higher levels in inflammation and regulate the inflammatory response in specific ways. The role of ROS in inflammation is complex and primarily determined by their relative amount, chemical properties, reactivity, subcellular localization and molecular environment, specificity for their biological targets, and availability and mechanisms of antioxidant defense systems. This eBook comprises twelve reviews and original articles that provide new findings on the role of ROS in the regulation of inflammatory processes, highlight emerging topics in redox signaling, describe new ROS detection techniques and discuss alternative therapeutic strategies to treat inflammatory disorders. The editorial that precedes the published articles briefly summarizes the main findings of each research paper. We hope that this collection of research articles contribute to a better understanding of ROS in inflammation.

Redox-Signaling in Neurodegenerative Diseases: Biomarkers, Targets, and Therapies

Redox-Signaling in Neurodegenerative Diseases: Biomarkers, Targets, and Therapies PDF

Author: Andreia Neves Carvalho

Publisher: Frontiers Media SA

Published: 2023-05-16

Total Pages: 152

ISBN-13: 2832523536

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Redox homeostasis results from the balance between the production of reactive species (e.g. ROS, RNS, etc) and their detoxification by endogenous or exogenous antioxidants. ROS play several important physiological roles, however, their excessive production or impaired detoxification is associated with oxidative stress and cellular injury. Importantly, oxidative damage to vulnerable central nervous system (CNS) cells is a common pathological feature of several neurodegenerative diseases. Antioxidants have been considered as attractive potential therapeutic agents to prevent or halt disease progression but the clinical efficacy of antioxidant treatment strategies is still marginal. Improvement of antioxidant therapy effectiveness might involve adjustment of preclinical to clinical settings and development of new efficient delivery methods and will require a more in-depth knowledge of cellular redox-signaling mechanisms. Promising novel redox-based therapeutic strategies are gaining relevance to combat oxidative stress associated with neurodegenerative diseases. These include boosting the endogenous antioxidant machinery through activation of the antioxidant master regulator Nrf2 (nuclear factor erythroid 2-related factor 2) or modulation of ROS production by NOX (nicotinamide adenine dinucleotide phosphate (NADPH) oxidase) inhibitors. Redox regulation of key cellular functions is currently recognized as an important cellular signaling mechanism and events such as post-translational modifications (e.g. S_glutathionylation, S_nitrosylation, glycosylation, etc) play important roles in redox signal transduction and might be instrumental to uncover pathological mechanisms and identify novel therapeutic targets in neurodegenerative diseases. This Research Topic focuses on redox signaling mechanisms and aims to provide novel insights into the role of redox-signaling, with particular emphasis on redox regulation involving post-translational modifications, in the pathophysiology of neurodegenerative diseases. Moreover, it aims to present an overview of the potential of antioxidants as therapeutics for CNS disorders with a special focus on emerging novel therapeutic redox-based strategies. We are particularly interested in studies: -addressing new redox-based molecular mechanisms contributing to neurodegenerative diseases; -exploring the role of naturally occurring compounds, standard medications, and nutraceuticals with antioxidant properties in modulating redox-signaling pathways and limiting and/or preventing oxidative damage associated with these disorders; -addressing mechanistically the role of post-translational modifications in the pathophysiology of neurodegenerative disorders.

New Methods for Detecting Biomarkers of Oxidative Stress and Redox Signaling on Protein Cysteine Residues

New Methods for Detecting Biomarkers of Oxidative Stress and Redox Signaling on Protein Cysteine Residues PDF

Author: Erika Bechtold

Publisher:

Published: 2010

Total Pages: 150

ISBN-13:

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Both nitric oxide and hydrogen peroxide, as well as their respective metabolites (reactive nitrogen or oxygen species), participate in a variety of cellular redox processes and have become well recognized as messengers in cellular signal transduction. One important mechanism by which cellular redox-based signaling occurs is reversible oxidation of cysteine residues in the presence of low concentrations of these oxidants. SNitrosothiols (RSNO) and sulfenic acids (RSOH) are thought to be two of the most common cysteine modifications, and formation of these species reversibly alters protein function. Protein oxidation is studied to a lesser extent than lipid and DNA oxidation in part because of a lack of sensitive, stable, readily detectable markers for tracking these unstable intermediates. We addressed the specificity of current RSNO detection methods, including the Biotin Switch Technique, using a mutated C165S alkyl hydroperoxide reductase (AhpC) enzyme from Salmonella typhimurium. Through both SDS PAGE and MS-based methods, we showed that the thiol alkylating agents used during this assay had an unexpected cross-reactivity with our model sulfenic acid, and in all cases formed covalent sulfoxide products. This cross-reactivity suggests that the Biotin Switch Technique may quantify both -SNO and -SOH versions of our enzyme, questioning the reliability of this assay. We also report the development of new chemical probes for the detection of Snitrosothiols and sulfenic acids. Using the water-soluble phosphine, tris(4,6-dimethyl-3-sulfonatophenyl)phosphine trisodium salt hydrate (TXPTS), we covalently labeled S-nitrosated cysteine, glutathione, and C165S AhpC. A combination of NMR and MS techniques reveals that these reactions produce covalent S-alkylphosphonium ion adducts (with S-P connectivity), TXPTS oxide, and a TXPTS-derived aza-ylide. Mechanistically, this reaction may proceed through an S-substituted aza-ylide or the direct displacement of nitroxyl from the RSNO group. This work provides a new means for detecting and quantifying S-nitrosated species in solution and highlights the role of triaryl phosphines as a new tools to elucidate the role of S-nitrosothiols in nitric oxide metabolism. The synthesis of novel dimedone-based chemical probes for the detection of protein sulfenic acids are also presented. These probes all contain a dimedone-based 1,3-cyclohexadione core, which covalently binds RSOHs, and reporter tags such as biotin for affinity capture and fluorescent labels for visual detection of cellular sulfenic acids. The application of these new chemical probes has improved our understanding of the role of sulfenicacid formation in a variety of cellular processes. These new probes have been used to monitor protein oxidation events in models of the immune response, angiogenesis, and cancer signaling pathways and have enhanced our understanding of the biological roles of hydrogen peroxide and other cellular ROS in signal transduction.

Thiol Redox Transitions in Cell Signaling, Part A

Thiol Redox Transitions in Cell Signaling, Part A PDF

Author:

Publisher: Academic Press

Published: 2010-07-22

Total Pages: 411

ISBN-13: 0123813468

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Thiol Redox Transitions in Cell Signaling, Part A, along with its companion (volume 475), presents methods and protocols dealing with thiol oxidation-reduction reactions and their implications as they relate to cell signaling. This first installment of Cadenas and Packer's two-volume treatment specifically deals with glutathionylation and dethiolation, and peroxide removal by peroxiredoxins/thioredoxins and glutathione peroxidases. The critically acclaimed laboratory standard for 40 years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Since 1955, each volume has been eagerly awaited, frequently consulted, and praised by researchers and reviewers alike. Over 450 volumes have been published to date, and much of the material is relevant even today--truly an essential publication for researchers in all fields of life sciences. Along with companion volume, provides a full overview of techniques necessary to the study of thiol redox in relation to cell signaling Gathers tried and tested techniques from global labs, offering both new and tried-and-true methods Relevant background and reference information given for procedures can be used as a guide to developing protocols in a number of disciplines

Thiol Redox Transitions in Cell Signaling, Part B

Thiol Redox Transitions in Cell Signaling, Part B PDF

Author:

Publisher: Academic Press

Published: 2010-08-19

Total Pages: 389

ISBN-13: 0123810043

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This volume, along with its companion (volume 474), presents methods and protocols dealing with thiol oxidation-reduction reactions and their implications as they relate to cell signaling. The critically acclaimed laboratory standard for 40 years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Since 1955, each volume has been eagerly awaited, frequently consulted, and praised by researchers and reviewers alike. Over 450 volumes have been published to date, and much of the material is relevant even today--truly an essential publication for researchers in all fields of life sciences. Along with companion volume, provides a full overview of techniques necessary to the study of thiol redox in relation to cell signaling Gathers tried and tested techniques from global labs, offering both new and tried-and-true methods Relevant background and reference information given for procedures can be used as a guide to developing protocols in a number of disciplines