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Mathematica for Bioinformatics

Author: George Mias

Publisher: Springer

Published: 2018-03-16

Total Pages: 384

ISBN-13: 3319723774

This book offers a comprehensive introduction to using Mathematica and the Wolfram Language for Bioinformatics. The chapters build gradually from basic concepts and the introduction of the Wolfram Language and coding paradigms in Mathematica, to detailed worked examples derived from typical research applications using Wolfram Language code. The coding examples range from basic sequence analysis, accessing genomic databases, differential gene expression, and machine learning implementations to time series analysis of longitudinal omics experiments, multi-omics integration and building dynamic interactive bioinformatics tools using the Wolfram Language. The topics address the daily bioinformatics needs of a broad audience: experimental users looking to understand and visualize their data, beginner bioinformaticians acquiring coding expertise in providing biological research solutions, and practicing expert bioinformaticians working on omics who wish to expand their toolset to include the Wolfram Language.

Mathematics of Bioinformatics

Author: Matthew He

Publisher: John Wiley & Sons

Published: 2011-03-16

Total Pages: 231

ISBN-13: 1118099524

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Mathematics of Bioinformatics: Theory, Methods, and Applications provides a comprehensive format for connecting and integrating information derived from mathematical methods and applying it to the understanding of biological sequences, structures, and networks. Each chapter is divided into a number of sections based on the bioinformatics topics and related mathematical theory and methods. Each topic of the section is comprised of the following three parts: an introduction to the biological problems in bioinformatics; a presentation of relevant topics of mathematical theory and methods to the bioinformatics problems introduced in the first part; an integrative overview that draws the connections and interfaces between bioinformatics problems/issues and mathematical theory/methods/applications.

Programming with Mathematica®

Author: Paul Wellin

Publisher: Cambridge University Press

Published: 2013-01-10

Total Pages: 731

ISBN-13: 1107009464

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This practical, example-driven introduction teaches the foundations of the Mathematica language so it can be applied to solving concrete problems.

Mathematical Biology II

Author: James D. Murray

Publisher: Springer Science & Business Media

Published: 2011-02-15

Total Pages: 834

ISBN-13: 0387952284

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This richly illustrated third edition provides a thorough training in practical mathematical biology and shows how exciting mathematical challenges can arise from a genuinely interdisciplinary involvement with the biosciences. It has been extensively updated and extended to cover much of the growth of mathematical biology. From the reviews: ""This book, a classical text in mathematical biology, cleverly combines mathematical tools with subject area sciences."--SHORT BOOK REVIEWS

An Invitation to Mathematical Biology

Author: David G Costa

Publisher: Springer Nature

Published: 2023-09-28

Total Pages: 128

ISBN-13: 3031402588

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The textbook is designed to provide a "non-intimidating" entry to the field of mathematical biology. It is also useful for those wishing to teach an introductory course. Although there are many good mathematical biology texts available, most books are too advanced mathematically for most biology majors. Unlike undergraduate math majors, most biology major students possess a limited math background. Given that computational biology is a rapidly expanding field, more students should be encouraged to familiarize themselves with this powerful approach to understand complex biological phenomena. Ultimately, our goal with this undergraduate textbook is to provide an introduction to the interdisciplinary field of mathematical biology in a way that does not overly terrify an undergraduate biology major, thereby fostering a greater appreciation for the role of mathematics in biology

An Introduction to Undergraduate Research in Computational and Mathematical Biology

Author: Hannah Callender Highlander

Publisher: Springer Nature

Published: 2020-02-17

Total Pages: 479

ISBN-13: 303033645X

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Speaking directly to the growing importance of research experience in undergraduate mathematics programs, this volume offers suggestions for undergraduate-appropriate research projects in mathematical and computational biology for students and their faculty mentors. The aim of each chapter is twofold: for faculty, to alleviate the challenges of identifying accessible topics and advising students through the research process; for students, to provide sufficient background, additional references, and context to excite students in these areas and to enable them to successfully undertake these problems in their research. Some of the topics discussed include: • Oscillatory behaviors present in real-world applications, from seasonal outbreaks of childhood diseases to action potentials in neurons • Simulating bacterial growth, competition, and resistance with agent-based models and laboratory experiments • Network structure and the dynamics of biological systems • Using neural networks to identify bird species from birdsong samples • Modeling fluid flow induced by the motion of pulmonary cilia Aimed at undergraduate mathematics faculty and advanced undergraduate students, this unique guide will be a valuable resource for generating fruitful research collaborations between students and faculty.

Theory and Mathematical Methods in Bioinformatics

Author: Shiyi Shen

Publisher: Springer Science & Business Media

Published: 2008-01-26

Total Pages: 450

ISBN-13: 3540748911

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This monograph addresses, in a systematic and pedagogical manner, the mathematical methods and the algorithms required to deal with the molecularly based problems of bioinformatics. Prominent attention is given to pair-wise and multiple sequence alignment algorithms, stochastic models of mutations, modulus structure theory and protein configuration analysis. Strong links to the molecular structures of proteins, DNA and other biomolecules and their analyses are developed.

An Introduction to Programming with Mathematica®

Author: Richard J. Gaylord

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 467

ISBN-13: 1461223229

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Accompanying the book, as with all TELOS sponsored publications, is an electronic component. In this case it is a DOS-Diskette produced by one of the coauthors, Paul Wellin. This diskette consists of Mathematica notebooks and packages which contain the codes for all examples and exercises in the book, as well as additional materials intended to extend many ideas covered in the text. It is of great value to teachers, students, and others using this book to learn how to effectively program with Mathematica .

Mathematical Biology

Author: Ronald W. Shonkwiler

Publisher: Springer Science & Business Media

Published: 2009-08-04

Total Pages: 552

ISBN-13: 0387709843

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This text presents mathematical biology as a field with a unity of its own, rather than only the intrusion of one science into another. The book focuses on problems of contemporary interest, such as cancer, genetics, and the rapidly growing field of genomics.

Mathematica® by Example

Author: Martha L Abell

Publisher: Academic Press

Published: 2014-05-09

Total Pages: 537

ISBN-13: 1483213900

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Mathematica by Example, Revised Edition presents the commands and applications of Mathematica, a system for doing mathematics on a computer. This text serves as a guide to beginning users of Mathematica and users who do not intend to take advantage of the more specialized applications of Mathematica. The book combines symbolic manipulation, numerical mathematics, outstanding graphics, and a sophisticated programming language. It is comprised of 7 chapters. Chapter 1 gives a brief background of the software and how to install it in the computer. Chapter 2 introduces the essential commands of Mathematica. Basic operations on numbers, expressions, and functions are introduced and discussed. Chapter 3 provides Mathematica's built-in calculus commands. The fourth chapter presents elementary operations on lists and tables. This chapter is a prerequisite for Chapter 5 which discusses nested lists and tables in detail. The purpose of Chapter 6 is to illustrate various computations Mathematica can perform when solving differential equations. Chapter 7 discusses some of the more frequently used commands contained in various graphics packages available with Mathematica. Engineers, computer scientists, physical scientists, mathematicians, business professionals, and students will find the book useful.