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Mapping Biological Systems to Network Systems

Author: Heena Rathore

Publisher: Springer

Published: 2016-02-10

Total Pages: 196

ISBN-13: 3319297821

The book presents the challenges inherent in the paradigm shift of network systems from static to highly dynamic distributed systems – it proposes solutions that the symbiotic nature of biological systems can provide into altering networking systems to adapt to these changes. The author discuss how biological systems – which have the inherent capabilities of evolving, self-organizing, self-repairing and flourishing with time – are inspiring researchers to take opportunities from the biology domain and map them with the problems faced in network domain. The book revolves around the central idea of bio-inspired systems -- it begins by exploring why biology and computer network research are such a natural match. This is followed by presenting a broad overview of biologically inspired research in network systems -- it is classified by the biological field that inspired each topic and by the area of networking in which that topic lies. Each case elucidates how biological concepts have been most successfully applied in various domains. Nevertheless, it also presents a case study discussing the security aspects of wireless sensor networks and how biological solution stand out in comparison to optimized solutions. Furthermore, it also discusses novel biological solutions for solving problems in diverse engineering domains such as mechanical, electrical, civil, aerospace, energy and agriculture. The readers will not only get proper understanding of the bio inspired systems but also better insight for developing novel bio inspired solutions.

Systems Biology for Signaling Networks

Author: Sangdun Choi

Publisher: Springer Science & Business Media

Published: 2010-08-09

Total Pages: 900

ISBN-13: 1441957979

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System Biology encompasses the knowledge from diverse fields such as Molecular Biology, Immunology, Genetics, Computational Biology, Mathematical Biology, etc. not only to address key questions that are not answerable by individual fields alone, but also to help in our understanding of the complexities of biological systems. Whole genome expression studies have provided us the means of studying the expression of thousands of genes under a particular condition and this technique had been widely used to find out the role of key macromolecules that are involved in biological signaling pathways. However, making sense of the underlying complexity is only possible if we interconnect various signaling pathways into human and computer readable network maps. These maps can then be used to classify and study individual components involved in a particular phenomenon. Apart from transcriptomics, several individual gene studies have resulted in adding to our knowledge of key components that are involved in a signaling pathway. It therefore becomes imperative to take into account of these studies also, while constructing our network maps to highlight the interconnectedness of the entire signaling pathways and the role of that particular individual protein in the pathway. This collection of articles will contain a collection of pioneering work done by scientists working in regulatory signaling networks and the use of large scale gene expression and omics data. The distinctive features of this book would be: Act a single source of information to understand the various components of different signaling network (roadmap of biochemical pathways, the nature of a molecule of interest in a particular pathway, etc.), Serve as a platform to highlight the key findings in this highly volatile and evolving field, and Provide answers to various techniques both related to microarray and cell signaling to the readers.

Networks of Networks in Biology

Author: Narsis A. Kiani

Publisher: Cambridge University Press

Published: 2021-04-01

Total Pages: 215

ISBN-13: 1108690858

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Biological systems are extremely complex and have emergent properties that cannot be explained or even predicted by studying their individual parts in isolation. The reductionist approach, although successful in the early days of molecular biology, underestimates this complexity. As the amount of available data grows, so it will become increasingly important to be able to analyse and integrate these large data sets. This book introduces novel approaches and solutions to the Big Data problem in biomedicine, and presents new techniques in the field of graph theory for handling and processing multi-type large data sets. By discussing cutting-edge problems and techniques, researchers from a wide range of fields will be able to gain insights for exploiting big heterogonous data in the life sciences through the concept of 'network of networks'.

Network Structures in Biological Systems and in Human Society

Author: Alexander V. Oleskin

Publisher: Nova Science Publishers

Published: 2014

Total Pages: 0

ISBN-13: 9781628085099

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This book focuses on network structures in biological systems and in human society. The term "network structure" is used in literature with at least two different meanings. The broader meaning (denoted by this author as a network sensu lato) refers to any system composed of nodes (vertices) connected by links (edges). In terms of this interpretation, the analytical tools that deal with centrality measures, clustering, and community structure-related criteria, small-world behaviour, and other network characteristics have provided important insights into the organisation and functioning of various objects, including biological systems and human society. However, there is a narrower interpretation of the term "network" that is predominantly used in the social sciences: a network structure is a decentralised, non-hierarchical system that is regulated by co-operative interactions among its nodes (a network sensu stricto. In this work, the term "networks" is interpreted in the latter sense. The characteristics of a network's organisational situation are considered in this work in comparison to other types of structures that are denoted as (1) hierarchical (vertical, pyramidal) structures characterised by a single dominant activity centre (central leader, pacemaker); and (2) (quasi-)market structures dominated by competitive, rather than co-operative, interactions among the actors involved. This is an interdisciplinary work because the three organisational structures are considered with respect to biological systems and to human society, including its political system.

Applied Statistics for Network Biology

Author: Matthias Dehmer

Publisher: John Wiley & Sons

Published: 2011-04-08

Total Pages: 441

ISBN-13: 3527638083

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The book introduces to the reader a number of cutting edge statistical methods which can e used for the analysis of genomic, proteomic and metabolomic data sets. In particular in the field of systems biology, researchers are trying to analyze as many data as possible in a given biological system (such as a cell or an organ). The appropriate statistical evaluation of these large scale data is critical for the correct interpretation and different experimental approaches require different approaches for the statistical analysis of these data. This book is written by biostatisticians and mathematicians but aimed as a valuable guide for the experimental researcher as well computational biologists who often lack an appropriate background in statistical analysis.

Recent Advances in Information Systems and Technologies

Author: Álvaro Rocha

Publisher: Springer

Published: 2017-03-28

Total Pages: 1054

ISBN-13: 3319565389

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This book presents a selection of papers from the 2017 World Conference on Information Systems and Technologies (WorldCIST'17), held between the 11st and 13th of April 2017 at Porto Santo Island, Madeira, Portugal. WorldCIST is a global forum for researchers and practitioners to present and discuss recent results and innovations, current trends, professional experiences and challenges involved in modern Information Systems and Technologies research, together with technological developments and applications. The main topics covered are: Information and Knowledge Management; Organizational Models and Information Systems; Software and Systems Modeling; Software Systems, Architectures, Applications and Tools; Multimedia Systems and Applications; Computer Networks, Mobility and Pervasive Systems; Intelligent and Decision Support Systems; Big Data Analytics and Applications; Human–Computer Interaction; Ethics, Computers & Security; Health Informatics; Information Technologies in Education; and Information Technologies in Radiocommunications.

Handbook on Biological Networks

Author: Stefano Boccaletti

Publisher: World Scientific

Published: 2010

Total Pages: 465

ISBN-13: 9812838791

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Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research ? the study of complex networks. In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology.

Constraint Decision-Making Systems in Engineering

Author: Das, Santosh Kumar

Publisher: IGI Global

Published: 2023-01-06

Total Pages: 333

ISBN-13: 1668473453

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In recent years, most applications deal with constraint decision-making systems as problems are based on imprecise information and parameters. It is difficult to understand the nature of data based on applications and it requires a specific model for understanding the nature of the system. Further research on constraint decision-making systems in engineering is required. Constraint Decision-Making Systems in Engineering derives and explores several types of constraint decisions in engineering and focuses on new and innovative conclusions based on problems, robust and efficient systems, and linear and non-linear applications. Covering topics such as fault detection, data mining techniques, and knowledge-based management, this premier reference source is an essential resource for engineers, managers, computer scientists, students and educators of higher education, librarians, researchers, and academicians.

Complex Systems Science in Biomedicine

Author: Thomas Deisboeck

Publisher: Springer Science & Business Media

Published: 2007-06-13

Total Pages: 857

ISBN-13: 0387335323

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Complex Systems Science in Biomedicine Thomas S. Deisboeck and J. Yasha Kresh Complex Systems Science in Biomedicine covers the emerging field of systems science involving the application of physics, mathematics, engineering and computational methods and techniques to the study of biomedicine including nonlinear dynamics at the molecular, cellular, multi-cellular tissue, and organismic level. With all chapters helmed by leading scientists in the field, Complex Systems Science in Biomedicine's goal is to offer its audience a timely compendium of the ongoing research directed to the understanding of biological processes as whole systems instead of as isolated component parts. In Parts I & II, Complex Systems Science in Biomedicine provides a general systems thinking perspective and presents some of the fundamental theoretical underpinnings of this rapidly emerging field. Part III then follows with a multi-scaled approach, spanning from the molecular to macroscopic level, exemplified by studying such diverse areas as molecular networks and developmental processes, the immune and nervous systems, the heart, cancer and multi-organ failure. The volume concludes with Part IV that addresses methods and techniques driven in design and development by this new understanding of biomedical science. Key Topics Include: • Historic Perspectives of General Systems Thinking • Fundamental Methods and Techniques for Studying Complex Dynamical Systems • Applications from Molecular Networks to Disease Processes • Enabling Technologies for Exploration of Systems in the Life Sciences Complex Systems Science in Biomedicine is essential reading for experimental, theoretical, and interdisciplinary scientists working in the biomedical research field interested in a comprehensive overview of this rapidly emerging field. About the Editors: Thomas S. Deisboeck is currently Assistant Professor of Radiology at Massachusetts General Hospital and Harvard Medical School in Boston. An expert in interdisciplinary cancer modeling, Dr. Deisboeck is Director of the Complex Biosystems Modeling Laboratory which is part of the Harvard-MIT Martinos Center for Biomedical Imaging. J. Yasha Kresh is currently Professor of Cardiothoracic Surgery and Research Director, Professor of Medicine and Director of Cardiovascular Biophysics at the Drexel University College of Medicine. An expert in dynamical systems, he holds appointments in the School of Biomedical Engineering and Health Systems, Dept. of Mechanical Engineering and Molecular Pathobiology Program. Prof. Kresh is Fellow of the American College of Cardiology, American Heart Association, Biomedical Engineering Society, American Institute for Medical and Biological Engineering.

Networks in Systems Biology

Author: Fabricio Alves Barbosa da Silva

Publisher: Springer Nature

Published: 2020-10-03

Total Pages: 381

ISBN-13: 3030518620

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This book presents a range of current research topics in biological network modeling, as well as its application in studies on human hosts, pathogens, and diseases. Systems biology is a rapidly expanding field that involves the study of biological systems through the mathematical modeling and analysis of large volumes of biological data. Gathering contributions from renowned experts in the field, some of the topics discussed in depth here include networks in systems biology, the computational modeling of multidrug-resistant bacteria, and systems biology of cancer. Given its scope, the book is intended for researchers, advanced students, and practitioners of systems biology. The chapters are research-oriented, and present some of the latest findings on their respective topics.