Molecular Systematics of Fishes

Molecular Systematics of Fishes PDF

Author: Thomas D. Kocher

Publisher: Elsevier

Published: 1997-07-10

Total Pages: 329

ISBN-13: 0080536913

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Sequenced biological macromolecules have revitalized systematic studies of evolutionary history. Molecular Systematics of Fishes is the first authoritative overview of the theory and application of these sequencing data to fishes. This volume explores the phylogeny of fishes at multiple taxonomic levels, uses methods of analysis of molecular data that apply both within and between fish populations, and employs molecule-based phylogenies to address broader questions of evolution. Targeted readers include ichthyologists, marine scientists, and all students, faculty, and researchers interested in fish evolution and ecology and vertebrate systematics. Focuses on the phylogeny and evolutionary biology of fishes Contains phylogenies of fishes at multiple taxonomic levels Applies molecule-based phylogenies to broader questions of evolution Includes methods for critique of analysis of molecular data

Avian Molecular Evolution and Systematics

Avian Molecular Evolution and Systematics PDF

Author: David P. Mindell

Publisher: Academic Press

Published: 1997-05-13

Total Pages: 403

ISBN-13: 0080527752

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The use of DNA and other biological macromolecules has revolutionized systematic studies of evolutionary history. Methods that use sequences of nucleotides and amino acids are now routinely used as data for addressing evolutionary questions that, although not new questions, have defied description and analysis. The world-renowned contributors use these new methods to unravel particular aspects of the evolutionary history of birds. Avian Molecular Evolution and Systematics presents an overview of the theory and application of molecular systematics, focusing on the phylogeny and evolutionary biology of birds. New, developing areas in the phylogeny of birds at multiple taxonomic areas are covered, as well as methods of analysis for molecular data, evolutionary genetics within and between bird populations, and the application of molecular-based phylogenies to broader questions of evolution. Contains authoritative contributions from leading researchers Discusses the utility of different molecular markers for questions of avian evolution, involving populations and higher-level taxa Applies molecular-based phylogenies of birds and molecular population genetics data to broad questions of organismal and molecular evolution. Compares and contrasts molecular and morphological data sets

Molecular Systematics and Evolution: Theory and Practice

Molecular Systematics and Evolution: Theory and Practice PDF

Author: R. DeSalle

Publisher: Birkhäuser

Published: 2013-03-08

Total Pages: 301

ISBN-13: 3034881142

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Important practical implications are established by case reports and specific examples. The present book is the ideal complement to the practitioner’s manual Techniques in Molecular Systematics and Evolution, recently published by the same editors in the Birkhäuser MTBM book series. The first part of this book deals with important applications of evolutionary and systematic analysis at different taxonomic levels. The second part discusses DNA multiple sequence alignment, species designations using molecular data, evo-devo and other topics that are problematic or controversial. In the last part, novel topics in molecular evolution and systematics, like genomics, comparative methods in molecular evolution and the use of large data bases are described. The final chapter deals with problems in bacterial evolution, considering the increasing access to large numbers of complete genome sequences.

Bioinformatics and Molecular Evolution

Bioinformatics and Molecular Evolution PDF

Author: Paul G. Higgs

Publisher: John Wiley & Sons

Published: 2013-04-30

Total Pages: 532

ISBN-13: 1118697065

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In the current era of complete genome sequencing, Bioinformatics and Molecular Evolution provides an up-to-date and comprehensive introduction to bioinformatics in the context of evolutionary biology. This accessible text: provides a thorough examination of sequence analysis, biological databases, pattern recognition, and applications to genomics, microarrays, and proteomics emphasizes the theoretical and statistical methods used in bioinformatics programs in a way that is accessible to biological science students places bioinformatics in the context of evolutionary biology, including population genetics, molecular evolution, molecular phylogenetics, and their applications features end-of-chapter problems and self-tests to help students synthesize the materials and apply their understanding is accompanied by a dedicated website - www.blackwellpublishing.com/higgs - containing downloadable sequences, links to web resources, answers to self-test questions, and all artwork in downloadable format (artwork also available to instructors on CD-ROM). This important textbook will equip readers with a thorough understanding of the quantitative methods used in the analysis of molecular evolution, and will be essential reading for advanced undergraduates, graduates, and researchers in molecular biology, genetics, genomics, computational biology, and bioinformatics courses.

Computer Analysis of Genetic Macromolecules

Computer Analysis of Genetic Macromolecules PDF

Author: N. A. Kolchanov

Publisher: World Scientific

Published: 1994

Total Pages: 590

ISBN-13: 9789810213787

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Molecular biology and genetics are fast-growing fields with significant results and findings being reported virtually every day. Raw data from the wet lab accumulate at an astonishing rate, making it necessary to analyze the biological data with the use of computers. This book reveals how the current challenges of molecular biology and genetics are met with computer and mathematical treatments. A combined effort of the Computational Genetics and Biophysics Group (Supercomputer Computations Research Institute, USA), the Theoretical Molecular Genetics (Russian Academy of Sciences, Russia) and the Bioinformatics Group (Consiglio Nazionale delle Ricerche, Italy), many of these findings are firsthand discoveries made by these groups. The book emphasizes the fundamental principles of the structural-functional organization of the 3 major classes of genetic macromolecules: DNA, RNA and proteins. It also introduces universally applicable theoretical principles into the enormous realm of raw data and develops an integrative, theoretical computer approach to the analysis of these macromolecules to gain insights into the complexities of their function and evolution.

Computer-Assisted Bacterial Systematics

Computer-Assisted Bacterial Systematics PDF

Author: Bozzano G Luisa

Publisher: Academic Press

Published: 2012-12-02

Total Pages: 458

ISBN-13: 0080984444

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Computer-Assisted Bacterial Systematics examines the theoretical basis of numerical taxonomy and its impact on microbial classification and identification. In addition to the principles of numerical taxonomy, computer-assisted identification and the stability of classifications are discussed, along with cladistics and the evolution of proteins. The impact of computer-assisted methods on the systematics of different bacteria and on the description of microbial populations in natural habitats is also considered. Comprised of 16 chapters, this book begins with an introduction to the origins of modern numerical taxonomy, with emphasis on the collaboration between P. H. A. Sneath and R. R. Sokal as well as the controversy concerning optimality criteria in numerical taxonomic research. Subsequent chapters deal with cladistics and the evolution of proteins; computer-assisted analysis of data from cooperative studies on mycobacteria; numerical analysis of various types of chemical data using multivariate statistics; and the value of non-hierarchical methods in bacterial taxonomy. The final chapter considers the future of numerical taxonomy and the shape of things to come. This monograph will be of interest to students, practitioners, and researchers in fields ranging from microbiology to biochemistry and bacteriology.

Plant Molecular Systematics

Plant Molecular Systematics PDF

Author: Daniel J. Crawford

Publisher: Wiley-Interscience

Published: 1990-04-24

Total Pages: 404

ISBN-13:

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Describes how the primary chemicals (protein, DNA) found in plants are used in determining plant taxonomic and evolutionary relationships--a growing area reflecting the application of molecular biologic techniques in macromolecular systematic research. Topics include seed protein electrophoresis, electrophoretic studies of Rubisco, enzyme electrophoresis, amino acid sequencing, and systematic serology. Emphasizes evaluation of the systematic potential of the various kinds of data made available by new technology. Includes case studies and discussion of trends and directions in molecular systematics.

Structural Approaches to Sequence Evolution

Structural Approaches to Sequence Evolution PDF

Author: Ugo Bastolla

Publisher: Springer Science & Business Media

Published: 2007-05-26

Total Pages: 375

ISBN-13: 3540353062

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Recent advances in understanding the thermodynamics of macromolecules, the topological properties of gene networks, the organization and mutation capabilities of genomes, and the structure of populations make it possible to incorporate these key elements into a broader and deeply interdisciplinary view of molecular evolution. This book gives an account of such a new approach, through clear tutorial contributions by leading scientists.