Information Theory and the Brain

Information Theory and the Brain PDF

Author: Roland Baddeley

Publisher: Cambridge University Press

Published: 2000-05-15

Total Pages: 362

ISBN-13: 0521631971

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This book deals with information theory, a new and expanding area of neuroscience which provides a framework for understanding neuronal processing.

Principles of Neural Information Theory

Principles of Neural Information Theory PDF

Author: James V Stone

Publisher:

Published: 2018-05-15

Total Pages: 214

ISBN-13: 9780993367922

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In this richly illustrated book, it is shown how Shannon's mathematical theory of information defines absolute limits on neural efficiency; limits which ultimately determine the neuroanatomical microstructure of the eye and brain. Written in an informal style this is an ideal introduction to cutting-edge research in neural information theory.

Information Theory, Inference and Learning Algorithms

Information Theory, Inference and Learning Algorithms PDF

Author: David J. C. MacKay

Publisher: Cambridge University Press

Published: 2003-09-25

Total Pages: 694

ISBN-13: 9780521642989

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Information theory and inference, taught together in this exciting textbook, lie at the heart of many important areas of modern technology - communication, signal processing, data mining, machine learning, pattern recognition, computational neuroscience, bioinformatics and cryptography. The book introduces theory in tandem with applications. Information theory is taught alongside practical communication systems such as arithmetic coding for data compression and sparse-graph codes for error-correction. Inference techniques, including message-passing algorithms, Monte Carlo methods and variational approximations, are developed alongside applications to clustering, convolutional codes, independent component analysis, and neural networks. Uniquely, the book covers state-of-the-art error-correcting codes, including low-density-parity-check codes, turbo codes, and digital fountain codes - the twenty-first-century standards for satellite communications, disk drives, and data broadcast. Richly illustrated, filled with worked examples and over 400 exercises, some with detailed solutions, the book is ideal for self-learning, and for undergraduate or graduate courses. It also provides an unparalleled entry point for professionals in areas as diverse as computational biology, financial engineering and machine learning.

Information Theory in Neuroscience

Information Theory in Neuroscience PDF

Author: Stefano Panzeri

Publisher: MDPI

Published: 2019-03-15

Total Pages: 280

ISBN-13: 3038976644

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As the ultimate information processing device, the brain naturally lends itself to being studied with information theory. The application of information theory to neuroscience has spurred the development of principled theories of brain function, and has led to advances in the study of consciousness, as well as to the development of analytical techniques to crack the neural code—that is, to unveil the language used by neurons to encode and process information. In particular, advances in experimental techniques enabling the precise recording and manipulation of neural activity on a large scale now enable for the first time the precise formulation and the quantitative testing of hypotheses about how the brain encodes and transmits the information used for specific functions across areas. This Special Issue presents twelve original contributions on novel approaches in neuroscience using information theory, and on the development of new information theoretic results inspired by problems in neuroscience.

Analyzing Neural Time Series Data

Analyzing Neural Time Series Data PDF

Author: Mike X Cohen

Publisher: MIT Press

Published: 2014-01-17

Total Pages: 615

ISBN-13: 0262019876

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A comprehensive guide to the conceptual, mathematical, and implementational aspects of analyzing electrical brain signals, including data from MEG, EEG, and LFP recordings. This book offers a comprehensive guide to the theory and practice of analyzing electrical brain signals. It explains the conceptual, mathematical, and implementational (via Matlab programming) aspects of time-, time-frequency- and synchronization-based analyses of magnetoencephalography (MEG), electroencephalography (EEG), and local field potential (LFP) recordings from humans and nonhuman animals. It is the only book on the topic that covers both the theoretical background and the implementation in language that can be understood by readers without extensive formal training in mathematics, including cognitive scientists, neuroscientists, and psychologists. Readers who go through the book chapter by chapter and implement the examples in Matlab will develop an understanding of why and how analyses are performed, how to interpret results, what the methodological issues are, and how to perform single-subject-level and group-level analyses. Researchers who are familiar with using automated programs to perform advanced analyses will learn what happens when they click the “analyze now” button. The book provides sample data and downloadable Matlab code. Each of the 38 chapters covers one analysis topic, and these topics progress from simple to advanced. Most chapters conclude with exercises that further develop the material covered in the chapter. Many of the methods presented (including convolution, the Fourier transform, and Euler's formula) are fundamental and form the groundwork for other advanced data analysis methods. Readers who master the methods in the book will be well prepared to learn other approaches.

Information Theory

Information Theory PDF

Author: JV Stone

Publisher: Sebtel Press

Published: 2015-01-01

Total Pages: 243

ISBN-13: 0956372856

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Originally developed by Claude Shannon in the 1940s, information theory laid the foundations for the digital revolution, and is now an essential tool in telecommunications, genetics, linguistics, brain sciences, and deep space communication. In this richly illustrated book, accessible examples are used to introduce information theory in terms of everyday games like ‘20 questions’ before more advanced topics are explored. Online MatLab and Python computer programs provide hands-on experience of information theory in action, and PowerPoint slides give support for teaching. Written in an informal style, with a comprehensive glossary and tutorial appendices, this text is an ideal primer for novices who wish to learn the essential principles and applications of information theory.

Directed Information Measures in Neuroscience

Directed Information Measures in Neuroscience PDF

Author: Michael Wibral

Publisher: Springer

Published: 2014-03-20

Total Pages: 234

ISBN-13: 3642544746

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Analysis of information transfer has found rapid adoption in neuroscience, where a highly dynamic transfer of information continuously runs on top of the brain's slowly-changing anatomical connectivity. Measuring such transfer is crucial to understanding how flexible information routing and processing give rise to higher cognitive function. Directed Information Measures in Neuroscience reviews recent developments of concepts and tools for measuring information transfer, their application to neurophysiological recordings and analysis of interactions. Written by the most active researchers in the field the book discusses the state of the art, future prospects and challenges on the way to an efficient assessment of neuronal information transfer. Highlights include the theoretical quantification and practical estimation of information transfer, description of transfer locally in space and time, multivariate directed measures, information decomposition among a set of stimulus/responses variables and the relation between interventional and observational causality. Applications to neural data sets and pointers to open source software highlight the usefulness of these measures in experimental neuroscience. With state-of-the-art mathematical developments, computational techniques and applications to real data sets, this book will be of benefit to all graduate students and researchers interested in detecting and understanding the information transfer between components of complex systems.

Dynamical Systems in Neuroscience

Dynamical Systems in Neuroscience PDF

Author: Eugene M. Izhikevich

Publisher: MIT Press

Published: 2010-01-22

Total Pages: 459

ISBN-13: 0262514206

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Explains the relationship of electrophysiology, nonlinear dynamics, and the computational properties of neurons, with each concept presented in terms of both neuroscience and mathematics and illustrated using geometrical intuition. In order to model neuronal behavior or to interpret the results of modeling studies, neuroscientists must call upon methods of nonlinear dynamics. This book offers an introduction to nonlinear dynamical systems theory for researchers and graduate students in neuroscience. It also provides an overview of neuroscience for mathematicians who want to learn the basic facts of electrophysiology. Dynamical Systems in Neuroscience presents a systematic study of the relationship of electrophysiology, nonlinear dynamics, and computational properties of neurons. It emphasizes that information processing in the brain depends not only on the electrophysiological properties of neurons but also on their dynamical properties. The book introduces dynamical systems, starting with one- and two-dimensional Hodgkin-Huxley-type models and continuing to a description of bursting systems. Each chapter proceeds from the simple to the complex, and provides sample problems at the end. The book explains all necessary mathematical concepts using geometrical intuition; it includes many figures and few equations, making it especially suitable for non-mathematicians. Each concept is presented in terms of both neuroscience and mathematics, providing a link between the two disciplines. Nonlinear dynamical systems theory is at the core of computational neuroscience research, but it is not a standard part of the graduate neuroscience curriculum—or taught by math or physics department in a way that is suitable for students of biology. This book offers neuroscience students and researchers a comprehensive account of concepts and methods increasingly used in computational neuroscience. An additional chapter on synchronization, with more advanced material, can be found at the author's website, www.izhikevich.com.

Spikes

Spikes PDF

Author: Fred Rieke

Publisher: MIT Press (MA)

Published: 1997

Total Pages: 418

ISBN-13: 9780262181747

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Intended for neurobiologists with an interest in mathematical analysis of neural data as well as the growing number of physicists and mathematicians interested in information processing by "real" nervous systems, Spikes provides a self-contained review of relevant concepts in information theory and statistical decision theory.

An Introduction to Transfer Entropy

An Introduction to Transfer Entropy PDF

Author: Terry Bossomaier

Publisher: Springer

Published: 2016-11-15

Total Pages: 190

ISBN-13: 3319432222

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This book considers a relatively new metric in complex systems, transfer entropy, derived from a series of measurements, usually a time series. After a qualitative introduction and a chapter that explains the key ideas from statistics required to understand the text, the authors then present information theory and transfer entropy in depth. A key feature of the approach is the authors' work to show the relationship between information flow and complexity. The later chapters demonstrate information transfer in canonical systems, and applications, for example in neuroscience and in finance. The book will be of value to advanced undergraduate and graduate students and researchers in the areas of computer science, neuroscience, physics, and engineering.