Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species

Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species PDF

Author: Alison Jane Haupt

Publisher: Stanford University

Published: 2011

Total Pages: 138

ISBN-13:

DOWNLOAD EBOOK →

The overarching theme of my thesis is to explore patterns of larval dispersal as they relate to management of fished marine species. I employed a case study of two species: Megastraea undosa and Parastichopus parvimensis to investigate patterns of phylogeography and assess relative scales of dispersal for these two species which are fished in both California, USA and Baja California, MEX. To examine how some generalities for many species can be made for a specific geographic area, I reviewed all existing phylogeographic studies around Cape Mendocino, CA. Dispersal at a snail's pace: Strong genetic structure in the fisheries gastropod Megastaea undosa. Information about larval dispersal is necessary for effective management of fisheries. Population genetics are often employed to assess dispersal, but these data also carry artifacts from the evolutionary history of a species. I assessed historical and modern demography of the wavy top snail, Megastraea undosa, a marine snail that is fished in California, USA and Baja California, Mexico. Genetic structure at the COI mtDNA locus is strikingly high, with large shifts in haplotype frequencies between southern Baja and southern California. Coalescent-based modeling of genetic data suggests that the population has limited dispersal throughout the range and underwent a northward range expansion after the last glacial maximum. I conclude that both historical and contemporary processes affect observed patterns of phylogeography in M. undosa. Consideration of the evolutionary history of target species allows for a more accurate interpretation of genetic data for management. iv Subtle genetic structure in the commercially fished warty sea cucumber, Parastichopus parvimensis. The warty sea cucumber, P. parvimensis, is fished commercially in both California, USA and Baja California, Mexico but little is known about the status of the fisheries or if separate stocks exist. P. parvimensis has a long pelagic larval duration of 50-90 days, which may translate to high connectivity throughout the species range (Monterey, CA, USA to Bahía Asuncion, BCS, Mexico). I examined phylogeographic patterns at the COI mtDNA locus and five microsatellite loci throughout the range of P. parvimensis and was particularly interested in patterns associated with the potential phylogeographic barriers of Point Conception, CA, USA and Punta Eugenia, BCS, MEX. I found no structure associated with Point Conception, but subtle genetic structure at both types of loci for Punta Eugenia, which may be mechanistically explained by oceanographic patterns. These data have important implications for management of the sea cucumber fishery and indicate that populations south of Punta Eugenia likely do not receive biologically meaningful input of larvae from northern populations to supplement the local fishery. Concordant phylogeographic patterns associated with the major headland of Cape Mendocino in northern California. Most coastlines are non-linear and headlands such as Cape Mendocino may interact with oceanographic processes to create barriers to dispersal. Though Cape Mendocino is a prominent headland, it has been largely ignored in the phylogeographic literature, which focuses instead on Point Conception in southern California. I reviewed and synthesized phylogeographic studies that include sampling sites north and south of Cape Mendocino and discuss the v oceanography and topography of the cape as potential mechanistic drivers of larval dispersal patterns. Slightly more than half (24 out of 46) of the surveyed species that showed significant genetic structure around this headland, which suggests that this headland may be an important barrier to dispersal and may limit connectivity between northern and central California. If populations north of Cape Mendocino have higher connectivity with populations in Oregon than with those in central California, marine spatial planning must occur at a multi-state scale to reach marine conservation goals.

Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species

Historical and Oceanographic Influences on Phylogeography in the California Current Ecosystem and Applications to Management of Marine Species PDF

Author: Alison Jane Haupt

Publisher:

Published: 2011

Total Pages:

ISBN-13:

DOWNLOAD EBOOK →

The overarching theme of my thesis is to explore patterns of larval dispersal as they relate to management of fished marine species. I employed a case study of two species: Megastraea undosa and Parastichopus parvimensis to investigate patterns of phylogeography and assess relative scales of dispersal for these two species which are fished in both California, USA and Baja California, MEX. To examine how some generalities for many species can be made for a specific geographic area, I reviewed all existing phylogeographic studies around Cape Mendocino, CA. Dispersal at a snail's pace: Strong genetic structure in the fisheries gastropod Megastaea undosa. Information about larval dispersal is necessary for effective management of fisheries. Population genetics are often employed to assess dispersal, but these data also carry artifacts from the evolutionary history of a species. I assessed historical and modern demography of the wavy top snail, Megastraea undosa, a marine snail that is fished in California, USA and Baja California, Mexico. Genetic structure at the COI mtDNA locus is strikingly high, with large shifts in haplotype frequencies between southern Baja and southern California. Coalescent-based modeling of genetic data suggests that the population has limited dispersal throughout the range and underwent a northward range expansion after the last glacial maximum. I conclude that both historical and contemporary processes affect observed patterns of phylogeography in M. undosa. Consideration of the evolutionary history of target species allows for a more accurate interpretation of genetic data for management. iv Subtle genetic structure in the commercially fished warty sea cucumber, Parastichopus parvimensis. The warty sea cucumber, P. parvimensis, is fished commercially in both California, USA and Baja California, Mexico but little is known about the status of the fisheries or if separate stocks exist. P. parvimensis has a long pelagic larval duration of 50-90 days, which may translate to high connectivity throughout the species range (Monterey, CA, USA to Bahía Asuncion, BCS, Mexico). I examined phylogeographic patterns at the COI mtDNA locus and five microsatellite loci throughout the range of P. parvimensis and was particularly interested in patterns associated with the potential phylogeographic barriers of Point Conception, CA, USA and Punta Eugenia, BCS, MEX. I found no structure associated with Point Conception, but subtle genetic structure at both types of loci for Punta Eugenia, which may be mechanistically explained by oceanographic patterns. These data have important implications for management of the sea cucumber fishery and indicate that populations south of Punta Eugenia likely do not receive biologically meaningful input of larvae from northern populations to supplement the local fishery. Concordant phylogeographic patterns associated with the major headland of Cape Mendocino in northern California. Most coastlines are non-linear and headlands such as Cape Mendocino may interact with oceanographic processes to create barriers to dispersal. Though Cape Mendocino is a prominent headland, it has been largely ignored in the phylogeographic literature, which focuses instead on Point Conception in southern California. I reviewed and synthesized phylogeographic studies that include sampling sites north and south of Cape Mendocino and discuss the v oceanography and topography of the cape as potential mechanistic drivers of larval dispersal patterns. Slightly more than half (24 out of 46) of the surveyed species that showed significant genetic structure around this headland, which suggests that this headland may be an important barrier to dispersal and may limit connectivity between northern and central California. If populations north of Cape Mendocino have higher connectivity with populations in Oregon than with those in central California, marine spatial planning must occur at a multi-state scale to reach marine conservation goals.

Seaweed Phylogeography

Seaweed Phylogeography PDF

Author: Zi-Min Hu

Publisher: Springer

Published: 2016-01-04

Total Pages: 398

ISBN-13: 9401775346

DOWNLOAD EBOOK →

The book provides an overview of research on the remarkable diversity, adaptive genetic differentiation, and evolutionary complexity of intertidal macroalgae species. Through incorporating molecular data, ecological niche and model-based phylogeographic inference, this book presents the latest findings and hypotheses on the spatial distribution and evolution of seaweeds in the context of historical climate change (e.g. the Quaternary ice ages), contemporary global warming, and increased anthropogenic influences. The chapters in this book highlight past and current research on seaweed phylogeography and predict the future trends and directions. This book frames a number of research cases to review how biogeographic processes and interactive eco-genetic dynamics shaped the demographic histories of seaweeds, which furthermore enhances our understanding of speciation and diversification in the sea. Dr. Zi-Min Hu is an associate professor at Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China. Dr. Ceridwen Fraser is a senior lecturer at Fenner School of Environment and Society, Australian National University, Canberra, Australia.

The Ecology of Ocean Acidification

The Ecology of Ocean Acidification PDF

Author: Jeremy M. Rose

Publisher:

Published: 2015

Total Pages: 152

ISBN-13:

DOWNLOAD EBOOK →

Ocean Acidification (OA) has emerged as a major threat to marine ecosystems, particularly regarding calcifying organisms. A growing body of literature describing laboratory investigations into pH stress indicates broadly deleterious effects for calcifiers, but responses vary greatly across taxa and can be influenced by variations in other environmental characteristics. Scaling laboratory results to ecological performance is critical for understanding the impacts of OA on marine communities. One method that can be useful for elucidating these ecological impacts is to study organisms and communities in environments that naturally vary in pH. The California Current Large Marine Ecosystem (CCLME) is one such ecosystem in which pH varies both in space and over time, bathing intertidal communities in a mosaic of pH conditions. The dynamics of the CCLME during the upwelling season also drive biologically-relevant variation in productivity and temperature. My dissertation leverages variation in oceanographic processes along the CCLME to explore the potential for OA impacts on rocky intertidal community distributions and the performances of two major space occupiers in rocky intertidal communities. In Chapter 2, a series of large scale community surveys along the CCLME were re-examined to ask if distributions of calcifiers and their mineral forms differ whether these differences are linked to environmental conditions. The patterns of differential calcifier abundances that emerge may better inform studies into the potential community impacts of OA by highlighting regions where calcifiers are relatively diverse or replete. Although these patterns are partially driven by complex interactions among temperature, phytoplankton productivity and upwelling, much of the spatial variation in calcifier abundance remains unexplained, suggesting the need to better characterize the pH environment along this oceanographically-complex region. In Chapter 3, I explored the relative influence of the pH mosaic along the CCLME on performance of the California mussel, Mytilus californianus. When considered along with other known stressors such as temperature and chlorophyll-a variations, pH meaningfully contributed toward explaining variation in mussel growth, condition and shell thickness. Contrary to expectation, some aspects of mussel performance were enhanced at comparatively low pH sites. The potential implications of this work include mediation of pH stress by other environmental factors, energetic trade-offs between calcified and soft tissue development, a life history transition toward increased resilience, and genotypic or persistent phenotypic differences that integrate exposure history. In Chapter 4, I investigated the relative influence of natural pH variation on performance of the purple sea urchin, Strongylocentrotus purpuratus. As with the California mussel study in Chapter 3, aspects of sea urchin calcified structures were enhanced, not suppressed as expected, at sites with comparatively low pH, after considering the effects of algal consumption and mean temperature. The combined results of Chapters 3 and 4 underscore the complex interactions between multiple environmental stressors and organismal physiology, highlight the biological relevance of pH on ecological performance, and suggest that life in areas already subject to natural pH variation may have the adaptive capacity to persist under future conditions.

Historical Biogeography of Neotropical Freshwater Fishes

Historical Biogeography of Neotropical Freshwater Fishes PDF

Author: James S. Albert

Publisher: Univ of California Press

Published: 2011-03-08

Total Pages: 406

ISBN-13: 0520268687

DOWNLOAD EBOOK →

“Full of the details we ichthyologists love, this book will clearly be a standard reference on South American fishes for decades to come. The amazingly detailed glossary alone may well be worth the price of the book!” --Peter B. Moyle, author of Inland Fishes of California “A major contribution to our understanding of multiple aspects of the Neotropical freshwater fish fauna. The book will be of interest not only to ichthyologists, but also to a broader audience of researchers working on freshwater organisms and general biogeographic patterns.”--Richard P. Vari, National Museum of Natural History, Smithsonian Institution “An up-to-date summary of our knowledge of a major continental biodiversity area, that should attract a wide variety of readers."--William Fink, University of Michigan “Successfully brings together disparate information and introduces new data and analyses, giving a vast overview of neotropical freshwater fishes.” --Brian Crother, Southeastern Louisiana University