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Halophiles: Genetics and Genomes

Author: R. Thane Papke

Publisher: Caister Academic Press

Published: 2019-04-23

Total Pages: 218

ISBN-13: 9781912530182

Extreme halophilic environments, including salt lakes and springs, seawater evaporation facilities for the production of sea salt, and subterranean salt deposits derived from ancient oceans are distributed patchily all over the earth. The life that dominates them is microbial e.g., prokaryotes and the viruses that infect them. The best studied in these environments are the haloarchaea (family Halobacteriaceae), a diverse group of salt-loving organisms in the archaeal phylum Euryarchaeota. These remarkable organisms have an obligate requirement for salt concentrations between 10% and 35% NaCl for survival (sea water has 3.5% salt). Haloarchaea have evolved several biochemical and molecular strategies to counteract the deleterious effects of their salty environments including efficient ion pumps, UV absorbing pigments, proteins that can resistant the effects of osmotic stress and the denaturing effects of salts. The best studied extremely halophilic member of the Bacteria is Salinibacter, which is abundant in saltern crystallizer ponds worldwide. The application of modern genomic approaches to research on halophilic Archaea and Bacteria and their viruses in recent years has yielded fascinating insights into the adaptations and evolution of these unique organisms.This book highlights current genetics and genomics research to provide a timely overview. Chapters are written by expert authors from around the world and include topics such as: ecology and evolution of Haloquadratum walsbyi; microdiversity of Salinibacter ruber; horizontal gene transfer in halobacteria; comparative genomics of haloarchaeal viruses; genomics of the halophilic bacteria Natranaerobius thermophilus and Halobacillus halophilus; the haloarchaeal cell wall; cell cycle and polyploidy in haloarchaea; cell regulation by proteolytic systems and protein conjugation.This major new work represents a valuable source of information to all those scientists interested in halophilic microorganisms, extremophiles, microbial ecology and environmental microbiology.

Halophiles

Author: R. Thane Papke

Publisher: Caister Academic Press Limited

Published: 2014

Total Pages: 0

ISBN-13: 9781908230423

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The application of modern genomic approaches to research on halophilic Archaea and Bacteria and their viruses in recent years has yielded fascinating insights into the adaptations and evolution of these unique organisms. This book highlights current genetics and genomics research to provide a timely overview.

Physiology, Genomics, and Biotechnological Applications of Extremophiles

Author: Gunjal, Aparna B.

Publisher: IGI Global

Published: 2021-12-10

Total Pages: 473

ISBN-13: 1799891461

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Extremophiles are organisms that are able to live in extreme conditions due to their unique physiological and genetic adaptations. Extremophiles are harnessed for their extremozymes that have wide applications in biotechnology, pharmaceutics, and industry. Recent developments in genomics and proteomics have helped unravel the mechanism of survival, physiological adaptation, and genomics structure of extremophiles. Physiology, Genomics, and Biotechnological Applications of Extremophiles covers innovative developments in understanding the physiology and biochemistry of extremophiles using the -omics perspective, focuses on the advancement in mechanisms of the extremophiles that makes them able to survive under extreme conditions, and discusses the applications of extremophiles in astrobiology. Covering topics such as genomics and the history and identification of extremophiles, it is ideal for students, professors, researchers, academicians, microbiologists, agricultural scientists, and biotechnologists.

Advances in Understanding the Biology of Halophilic Microorganisms

Author: Russell H. Vreeland

Publisher: Springer Science & Business Media

Published: 2012-12-14

Total Pages: 241

ISBN-13: 9400755392

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This book is designed to be a long term career reference. The chapters present modern procedures. This is a how-to-book with a difference. These chapters: - reveal the background information about working with salt loving organisms, - are loaded with information about how experiments are conducted under high salt, - provide information about analyses that work under these conditions and those that may not, - present a wide range of details from laboratory designs to equipment used and even to simple anecdotal hints that can only come from experience. Microbiological training focuses largely on the growth, the handling and the study of the microbes associated with humans and animals. Yet the largest proportion of the Earth’s microbiota lives in saline environments such as the Oceans, saline deserts and terminal hypersaline environments. This need for salt can be intimidating for those interested in entering the field or for those interested in understanding how such research is accomplished.

Halophilic Microorganisms

Author: Antonio Ventosa

Publisher: Springer Science & Business Media

Published: 2013-11-21

Total Pages: 363

ISBN-13: 366207656X

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Various groups of microorganisms - bacteria, archaea, algae and even fungi - have adapted to a life in a hypersaline environment. Halophilic Microorganisms explores the many-fold aspects of life under these extreme conditions. Several contributions analyze the microbial communities in different hypersaline environments such as salterns, soda lakes, and the Dead Sea or salt sediments. Reviews of their biodiversity, phylogeny, and genetics are given as well as of the diverse adaptation strategies of salt-tolerant or salt-requiring microorganisms. Microorganisms that have adapted to moderate salt concentrations or to habitats with drastic fluctuations are also treated in addition to the extreme halophiles. Their physiological, biochemical and molecular mechanisms developed in response to salinity and high osmotic pressure as well as current and future biotechnological applications are presented.

The Pangenome

Author: Hervé Tettelin

Publisher: Springer Nature

Published: 2020-04-30

Total Pages: 311

ISBN-13: 3030382818

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This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.

General and Applied Aspects of Halophilic Microorganisms

Author: Francisco Rodriguez-Valera

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 384

ISBN-13: 1461537304

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During recent years the subject of extreme environments and extremophiles has become a central topic in modern Biology. The capability of some microorganisms to withstand, and often prefer, the harsh conditions found in such environments is helping to define the physicho-chemicallimits of life and in consequence its essential nature. Halophiles are one of the most representative types of extremophiles, requiring high concentrations of inorganic salts, mostly sodium chloride, to grow and survive. They inhabit hypersaline environments, the distribution and abundance of which dur ing geological eras are attested by the vast amounts of evaporite rocks present in the Earth crust and by their role in the generation of petroleum deposits. The corditions of high osmolarity and ionic strength that are concomitant with concentrated salt solutions challenge the stability of lipid bilayers and the structure of proteins forcing halophilic microbes to develop specialized molecules and physiological me;;hanisms to cope with this environmental stress. Even so, halophilism is a widespread trait in the microbial world. All the major groups of eucaryotic microbes, two groups of archaeobacteria and most phylogenetic branches of eubacteria have halophilic representatives. Therefore, the study of halophilic microorganisms is indeed a highly heterogeneous and extense topic. The present volume contains the contributions to the FEMS-NATO Advanced Research Workshop on "General and Applied Aspects of Halophilic Microorganisms" held at Alicante, Spain, September 17-22, 1989.

Halophilic Microorganisms and their Environments

Author: Aharon Oren

Publisher: Springer Science & Business Media

Published: 2006-04-06

Total Pages: 571

ISBN-13: 0306480530

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"This water" he told me, "runs out to the eastern region, and flows into the Arabah; and when it comes into the sea, into the sea of foul waters [i. e. , the Dead Sea], the water will become wholesome. Every living creature that swarms will be able to live wherever this stream goes; the fish will be very abundant once these waters have reached there. It will be wholesome, and everything will live wherever this stream goes. Fishermen shall stand beside it all the way from En-gedi to En-eglaim; it shall be a place for drying nets; and the fish will be of various kinds [and] most plentiful, like the fish of the Great Sea. " Ezekiel’s prophecy (Ezekiel 47: 8-10) for revival and purification of the Dead Sea waters This new book on "Halophilic Microorganisms and their Environments" is the fifth volume in the COLE series (Cellular Origin and Life in Extreme Habitats (see: http://www. wkap. nl/prod/s/COLE). In the previous books we covered aspects of enigmatic microorganisms, microbial diversity, astrobiology, and symbiosis, so this book on halophilic microbes adds a fitting link to the rest of series' books. Since ancient times hypersaline habitats have been considered extreme environments, and some were thought not to sustain life at all. Yet, every organism requires salt for its existence. Salty places have been compared to an environment of extinction (e. g. , the Dead Sea).

HALOPHILIC BACTERIA

Author: Francisco Rodriguez-Valera

Publisher: Springer

Published: 1988

Total Pages: 162

ISBN-13:

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Adaptation to Life at High Salt Concentrations in Archaea, Bacteria, and Eukarya

Author: Nina Gunde-Cimerman

Publisher: Springer Science & Business Media

Published: 2005-09-30

Total Pages: 600

ISBN-13: 9781402036323

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Salt is an essential requirement of life. Already from ancient times (e. g. , see the books of the Bible) its importance in human life has been known. For example, salt symbolizes destruction (as in Sodom and Gomorra), but on the other hand it has been an ingredient of every sacrifice during the Holy Temple periods. Microbial life in concentrated salt solutions has fascinated scientists since its discovery. Recently there have been several international meetings and books devoted entirely to halophiles. This book includes the proceedings of the “Halophiles 2004” conference held in Ljubljana, Slovenia, in September 2004 (www. u- lj. si/~bfbhaloph/index. html). This meeting was attended by 120 participants from 25 countries. The editors have selected presentations given at the meeting for this volume, and have also invited a number of contributions from experts who had not been present in Ljubljana. This book complements “Halophilic Microorganisms”, edited by A. Ventosa and published by Springer-Verlag (2004), “Halophilic Microorganism and their Environments” by A. Oren (2002), published by Kluwer Academic Publishers as volume 5 of “Cellular Origins, Life in Extreme Habitats and Astrobiology” (COLE), and “Microbiology and Biogeochemistry of Hypersaline Environments” edited by A. Oren, and published by CRC Press, Boca Raton (1999). Salt-loving (halophilic) microorganisms grow in salt solutions above seawater salinity (~3. 5% salt) up to saturation ranges (i. e. , around 35% salt). High concentrations of salt occur in natural environments (e. g.