Fundamentals of Diffusion-Based Molecular Communication in Nanonetworks

Fundamentals of Diffusion-Based Molecular Communication in Nanonetworks PDF

Author: Massimiliano Pierobon

Publisher:

Published: 2014-04

Total Pages: 164

ISBN-13: 9781601988164

DOWNLOAD EBOOK →

Molecular communication (MC) is a promising bio-inspired paradigm for the exchange of information among nanotechnology-enabled devices. These devices, called nanomachines, are expected to have the ability to sense, compute and actuate, and interconnect into networks, called nanonetworks, to overcome their individual limitations and benefit from collaborative efforts. MC realizes the exchange of information through the transmission, propagation, and reception of molecules, and it is proposed as a feasible solution for nanonetworks. This idea is motivated by the observation of nature, where MC is successfully adopted by cells for intracellular and intercellular communication. MC-based nanonetworks have the potential to be the enabling technology for a wide range of applications, mostly in the biomedical, but also in the industrial and surveillance fields. The focus of this Ph. D. thesis is on the most fundamental type of MC, i.e., diffusion-based MC, where the propagation of information-bearing molecules between a transmitter and a receiver is realized through free diffusion in a fluid. The objectives of the research presented in this thesis are to analyze the MC paradigm from the point of view of communication engineering and information theory, and to provide solutions to the modeling and design of MC-based nanonetworks. First, a physical end-to-end model is realized to study each component in a basic diffusion-based MC system design, as well as the overall system, in terms of gain and delay. Second, the noise sources affecting a diffusion-based MC are identified and statistically modeled. Third, upper/lower bounds to the capacity are derived to evaluate the information-theoretic performance of diffusion-based MC. Fourth, a stochastic analysis of the interference when multiple transmitters access the diffusion-based MC channel is provided. Fifth, as a proof of concept, a design of a diffusion-based MC system built upon genetically-engineered biological circuits is analyzed. This research provides fundamental results that establish a basis for the modeling, design, and realization of future MC-based nanonetworks, as novel technologies and tools are being developed.

Fundamentals of Diffusion-based Molecular Communication in Nanonetworks

Fundamentals of Diffusion-based Molecular Communication in Nanonetworks PDF

Author: Massimiliano Pierobon

Publisher:

Published: 2014

Total Pages: 147

ISBN-13: 9781601988171

DOWNLOAD EBOOK →

Molecular communication (MC) is a promising bio-inspired paradigm for the interconnection of autonomous nanotechnology-enabled devices, or nanomachines, into nanonetworks. MC realizes the exchange of information through the transmission, propagation, and reception of molecules, and it is proposed as a feasible solution for nanonetworks. This idea is motivated by the observation of nature, where MC is successfully adopted by cells for intracellular and intercellular communication. MC-based nanonetworks have the potential to be the enabling technology for a wide range of applications, mostly in the biomedical, but also in the industrial and surveillance fields. The focus of this article is on the most fundamental type of MC, i.e., diffusion-based MC, where the propagation of information-bearing molecules between a transmitter and a receiver is realized through free diffusion in a fluid. The objectives of the research presented in this article are to analyze an MC link from the point of view of communication engineering and information theory, and to provide solutions to the modeling and design of MC-based nanonetworks. First, a deterministic model is realized to study each component, as well as the overall diffusion-based- MC link, in terms of gain and delay. Second, the noise sources affecting a diffusion-based-MC link are identified and statistically modeled. Third, upper/lower bounds to the capacity are derived to evaluate the information-theoretic performance of diffusion-based MC. Fourth, an analysis of the interference produced by multiple diffusion-based MC links in a nanonetwork is provided. This research provides fundamental results that establish a basis for the modeling, design, and realization of future MC-based nanonetworks, as novel technologies and tools are being developed.

Modeling, Methodologies and Tools for Molecular and Nano-scale Communications

Modeling, Methodologies and Tools for Molecular and Nano-scale Communications PDF

Author: Junichi Suzuki

Publisher: Springer

Published: 2017-03-15

Total Pages: 584

ISBN-13: 3319506889

DOWNLOAD EBOOK →

This book reports on cutting-edge modeling techniques, methodologies and tools used to understand, design and engineer nanoscale communication systems, such as molecular communication systems. Moreover, it includes introductory materials for those who are new to the field. The book’s interdisciplinary approach, which merges perspectives in computer science, the biological sciences and nanotechnology, will appeal to graduate students and researchers in these three areas.The book is organized into five parts, the first of which describes the fundamentals of molecular communication, including basic concepts, models and designs. In turn, the second part examines specific types of molecular communication found in biological systems, such as neuronal communication in the brain. The book continues by exploring further types of nanoscale communication, such as fluorescence resonance energy transfer and electromagnetic-based nanoscale communication, in the third part, and by describing nanomaterials and structures for practical applications in the fourth. Lastly, the book presents nanomedical applications such as targeted drug delivery and biomolecular sensing.

Molecular Communication

Molecular Communication PDF

Author: Tadashi Nakano

Publisher: Cambridge University Press

Published: 2013-09-12

Total Pages: 193

ISBN-13: 1107292387

DOWNLOAD EBOOK →

This comprehensive guide, by pioneers in the field, brings together, for the first time, everything a new researcher, graduate student or industry practitioner needs to get started in molecular communication. Written with accessibility in mind, it requires little background knowledge, and provides a detailed introduction to the relevant aspects of biology and information theory, as well as coverage of practical systems. The authors start by describing biological nanomachines, the basics of biological molecular communication and the microorganisms that use it. They then proceed to engineered molecular communication and the molecular communication paradigm, with mathematical models of various types of molecular communication and a description of the information and communication theory of molecular communication. Finally, the practical aspects of designing molecular communication systems are presented, including a review of the key applications. Ideal for engineers and biologists looking to get up to speed on the current practice in this growing field.

Molecular Communications and Nanonetworks

Molecular Communications and Nanonetworks PDF

Author: Barış Atakan

Publisher: Springer Science & Business Media

Published: 2014-04-26

Total Pages: 196

ISBN-13: 1493907395

DOWNLOAD EBOOK →

This book will introduce the concept of molecular communications and nanonetworks. The publication addresses why nanoscale communication is needed for the sophisticated nano and biotechnology applications. The text introduces the frontier applications of the molecular communication and nanonetworks. The book examines the molecular communication types called active, passive, and gap junction molecular communications. The author presents the molecular transmitter, receiver, encoding and decoding mechanisms used in these systems. Discussing the molecular communication system model and looking at the unique characteristics of practical molecular communication systems and these chemical reactions and their effects on the communication performance. Finally, the book examines the point-to-point, broadcast, and multiple-access molecular channel and shows two promising application examples of the nanonetworks. The first application example is the body area nanonetworks used in nanomedicine. the second nanonetwork application example, i.e., NanoSensor Networks (NSNs) with Molecular Communication.

Nanoscale Networking and Communications Handbook

Nanoscale Networking and Communications Handbook PDF

Author: John R. Vacca

Publisher: CRC Press

Published: 2019-07-05

Total Pages: 640

ISBN-13: 1498727328

DOWNLOAD EBOOK →

This comprehensive handbook serves as a professional reference as well as a practitioner's guide to today's most complete and concise view of nanoscale networking and communications. It offers in-depth coverage of theory, technology, and practice as they relate to established technologies and recent advancements. It explores practical solutions to a wide range of nanoscale networking and communications issues. Individual chapters, authored by leading experts in the field, address the immediate and long-term challenges in the authors' respective areas of expertise.

Fundamentals of Concentration-encoded Molecular Communication

Fundamentals of Concentration-encoded Molecular Communication PDF

Author: Mohammad Upal Mahfuz

Publisher:

Published: 2013

Total Pages:

ISBN-13:

DOWNLOAD EBOOK →

Molecular communication (MC) is a new bio-inspired communication paradigm towards realizing the communication and networking at the nanoscale to microscale dimensions among a vast number of engineered natural and/or artificial nanomachines communicating with each other to form a nanonetwork. In this thesis, we investigate a concentration-encoded molecular communication (CEMC) system where the transmitting nanomachine (TN) and the receiving nanomachine (RN) communicate with a single type of information molecules by modulating the transmission rate of information molecules at the TN. The information molecules undergo ideal (i.e. free) diffusion in three dimensions and become available to the RN that observes the concentration of the received molecules at its receptors and thus decodes the message. Our research shows that it is possible to realize complex modulation methods, combat the intersymbol interference (ISI), determine the effective communication ranges based on available signal concentration, develop signal detection schemes, and apply simple channel codes in a CEMC system. It has been found that the performance of the CEMC system is influenced by communication ranges, transmission data rates, ISI, and detection schemes. It is possible to sense the concentration signal intensity and develop optimum receiver structures that can detect the transmitted symbols at the RN. It is also possible to develop optimum signal detection schemes based on the interactions between the information molecules and the receptors using stochastic chemical kinetics (SCK) of the reaction events. Applying simple channel codes at the TN shows that it is possible to increase effective communication range in the CEMC system, however, this increases the complexity of the RN in implementing the detection circuitry. Finally, potential applications of CEMC would be in materializing CEMC-based molecular nanonetworks for emerging areas, e.g. in cancer detection and treatment, targeted drug delivery, and environmental protection and pollution control.

Synthetic Biology Guidelines for Diffusion Based Molecular Communication

Synthetic Biology Guidelines for Diffusion Based Molecular Communication PDF

Author: Simon Sassine Assaf

Publisher:

Published: 2019

Total Pages: 0

ISBN-13:

DOWNLOAD EBOOK →

Nanotechnology is widely seen as having huge potential to bring benefits to many areas of research and application. Nowadays, research studies are focusing on realizing nano-machines on the order of nanometers in size. A nano-machine is capable of performing simple tasks such as computing, data storing, sensing, and actuation. The capability for such nano-machine to communicate with each other would considerably expand their potential. Thereby, in order to fulfill more complex tasks nano-networks are needed. Indeed, nanonetworks are the connection and cooperation of millions of nano-machines. However, the traditional mechanisms used in traditional communication networks have been found inappropriate at the nano-scale. Thus, to enable this cooperation between nano-machines, several communication mechanisms have been proposed. Among the different methods for interconnecting nano-machines, Molecular Communications (MC) system is considered one of the most promising mechanisms, which is biologically plausible and occurs in living beings. MC uses physical molecules as information carriers. By employing molecules as information carriers, MC has quickly emerged as a bio-inspired approach. The exchange of information between the transmitter and an intended receiver is carried out via the transmission, propagation, and reception of molecules. The communication range of molecular communications can range from short-range to long-range. The focus of this Ph.D. thesis is on the most fundamental type of molecular communication, namely, Diffusion-based Molecular Communication (DMC) where the propagation of information molecules between a transmitter and a receiver is realized through free diffusion in a fluid environment. It begins by investigating and modeling the neuronal physical layer (layer 1) to understand better through simulation, and then to derive the appropriate performance metrics imposed by a point-to-point neuron neighboring receivers link, as well as by the Single Input Multiple Output (SIMO) network. Following that, the aim is to caracterize the physical channel of the neuron-to-neuron communication system, and to analyze the effect of the toxic proteins aggregation on the brain since this accumulation turns out to be the main reason behind chronic neurodegenerative disorder as in Alzheimer's disease, then ultimately to come up with a complete sense-actuation closed-loop system vision for fighting this neurodegenerative disorder. Lastly, the goal is to build a mathematical model to track the movement of spermatozoa during the process of chemotaxis, to describe better through simulation, to understand by quantifying the communication problem, then to investigate the effect of varying the appropriate metrics on the arrival time of the spermatozoa and then to propose new treatments which are more reliable, and less expensive than the existing one. It is concluded that the proposed study will provide to synthetic biology design oriented guidelines. In addition, this study presents new solutions for treating diseases which establish a new vision of dealing with them, as well as serve as guidelines for the medical committee.